Basic Information

Insect: Synergus umbraculus
Gene Symbol: Sall1
Assembly: GCA_900474325.1
Location: UCOK01018598.1:212361-215188[-]

Transcription Factor Domain

TF Family: zf-C2H2
Domain: zf-C2H2 domain
PFAM: PF00096
TF Group: Zinc-Coordinating Group
Description: The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
Hmmscan Out: # of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc

1 19 5.2e-06 0.00059 20.7 0.2 1 23 23 45 23 45 0.97

2 19 1.5e-05 0.0018 19.2 3.4 1 23 51 73 51 73 0.99

3 19 0.00062 0.071 14.1 0.4 1 23 79 101 79 101 0.96

4 19 0.0002 0.023 15.7 5.2 1 23 107 129 107 130 0.96

5 19 0.002 0.23 12.6 4.7 1 23 143 165 143 165 0.97

6 19 0.00022 0.026 15.5 1.1 3 23 175 195 174 195 0.98

7 19 8.4e-08 9.6e-06 26.3 0.1 3 23 203 223 201 223 0.97

8 19 3.2e-07 3.6e-05 24.5 0.8 1 23 229 251 229 251 0.97

9 19 7.3e-08 8.4e-06 26.5 1.5 1 23 257 279 257 279 0.99

10 19 0.23 26 6.1 1.6 2 23 319 341 318 341 0.96

11 19 3.1e-06 0.00036 21.4 0.9 1 23 347 370 347 370 0.98

12 19 0.031 3.6 8.8 0.5 2 23 376 398 376 398 0.96

13 19 0.017 1.9 9.6 0.1 1 23 403 425 403 425 0.97

14 19 0.04 4.6 8.4 2.6 1 23 431 454 431 454 0.89

15 19 6.7e-06 0.00077 20.3 3.2 1 23 473 496 473 496 0.96

16 19 0.00048 0.056 14.5 0.1 1 23 507 529 507 529 0.96

17 19 0.0067 0.77 10.9 3.6 1 23 535 557 535 557 0.95

18 19 5e-07 5.8e-05 23.9 1.1 1 23 563 585 563 585 0.98

19 19 0.00035 0.041 14.9 0.2 1 21 591 611 591 612 0.93

#	of	c-Evalue	i-Evalue	score	bias	hmm coord from	hmm coord to	ali coord from	ali coord to	env coord from	env coord to	acc
1	19	5.2e-06	0.00059	20.7	0.2	1	23	23	45	23	45	0.97
2	19	1.5e-05	0.0018	19.2	3.4	1	23	51	73	51	73	0.99
3	19	0.00062	0.071	14.1	0.4	1	23	79	101	79	101	0.96
4	19	0.0002	0.023	15.7	5.2	1	23	107	129	107	130	0.96
5	19	0.002	0.23	12.6	4.7	1	23	143	165	143	165	0.97
6	19	0.00022	0.026	15.5	1.1	3	23	175	195	174	195	0.98
7	19	8.4e-08	9.6e-06	26.3	0.1	3	23	203	223	201	223	0.97
8	19	3.2e-07	3.6e-05	24.5	0.8	1	23	229	251	229	251	0.97
9	19	7.3e-08	8.4e-06	26.5	1.5	1	23	257	279	257	279	0.99
10	19	0.23	26	6.1	1.6	2	23	319	341	318	341	0.96
11	19	3.1e-06	0.00036	21.4	0.9	1	23	347	370	347	370	0.98
12	19	0.031	3.6	8.8	0.5	2	23	376	398	376	398	0.96
13	19	0.017	1.9	9.6	0.1	1	23	403	425	403	425	0.97
14	19	0.04	4.6	8.4	2.6	1	23	431	454	431	454	0.89
15	19	6.7e-06	0.00077	20.3	3.2	1	23	473	496	473	496	0.96
16	19	0.00048	0.056	14.5	0.1	1	23	507	529	507	529	0.96
17	19	0.0067	0.77	10.9	3.6	1	23	535	557	535	557	0.95
18	19	5e-07	5.8e-05	23.9	1.1	1	23	563	585	563	585	0.98
19	19	0.00035	0.041	14.9	0.2	1	21	591	611	591	612	0.93

Sequence Information

Coding Sequence: atGACATTTCGTCACGTATGGAAATTAGTTGAACACTTAAAAAATTCCCACGGAATAAATCAAGGTTTCAAATGCGACGAGTGTGGTAAAGCTTTTCGAAGTCCAATGAATATTGCTCGACACAAATTGCTCCATACAGGTGTAAAAAGATACACTTGTGATATTTGCGATTATGCTTGTTATCAGAAAACGAATCTTGAATATCATCAACGAAGGCACTCGAAAgactattttttcttttgcgaGATATGCAGAAAAGGATTTCAACAGAAAAAAGAACTCGTAGAACATGGAAACGTGCATACTGGTCTAAAACCTTATCAATGTAAATGCTGCGACAAGTCATACCCATATAAGAAAAATCTAGTATCTCATATCCGAATTCATCATCCTGAAACGACAAAAACAAGGACGAGaagctataaatataaatgtcaattttgtaaggaaagatttttcaataaaaaattacttcaacAACATTCGAAATTACATAAGAGTTTTCcggagaattcaaaaatttgcgATCTGTGTGGTCTGCAGTTATCTTCAAGAAGTGCACTTACTCATCATCTAAAGACACATACTGGAGAGAAATCGATCATCTGTAATATTTGTGGCAAAGGTTTTGCTAAATgggataatttaaaagttcatcaGCGAATACACACAGGGGAAAAGCCATTTATTTGTTCGCAGTGTGGTAAAgctttttctcaaaaatctacACTTGTTCTTCATCTGAGGTATCATACTGGAGAAAGGCCTTATCGTTGTTCGGATTGTGGAAAGGATTTCGTCTCCAGTTCGCTTCTGAAAAGACACAAACAAACTCATGTTAATACtaaAAACTGGGCAAACCATGTTGAACTTCAAAGTGTTGGCGAATACAAGGTCAAGTTAGAGGAAGCACTCGAAAATTCAGACCAAAAATTCGAGGACAGTGGCGAAAAGTCCTGTAAATTTTGCGAGGAGAAGTTCCACTTCGTTACCAGATTAGTGGCACACCTACGTATAGTTCATGGAATTCTCAGGCCCTTCAAGTGTGATAGCTGTGGGAAAACGTATCCTCAGCAATTCATGTTGAACGCCCACATTAAAAAATCCCATACACCTAAAATAGAGTCTTGCAATCAATGTGACTTCATGGGAGTCTCAAAAGCAGATGTAGAAagacacagaaaaaaattacacaagGAGGTAAAGTACATCTGTGAAATCTGCAGTGAAGTCTTCCTCACTGAAGAATTATTGTTGACACATACGACCATGCACGAATTTATGCAGTTCCATCAGTGTAACGCATGTGGGAGTACTTTTGATGACCTCTATAGTCTCAGGGAACATAATCACCTTTATCATTATAACGCAAACTTAGGAATAGCAAAAGAAACGGAGGACCAACCACCAACACAACACAAATGTGATATTTGTGGCAAAACTTATAAATATCGATCTATGTTGAAACAACATAAAATAAAGGGTCATTCAGACTCGGTTGCATGTGAGAGGCGAAGATATCTTTGCGCTCTTTGTGGTAAAGAACTAAAAACTGCTAAAGGTTTAGAGATACACACGAGGTCGCATACTGGGGAGAAACCATATACTTGTGAAGTTTGTGGAAAATGCTTTGCTTGTGAAACTTTATTAAGAACCCATAGTGTGACCCATACGggagaaagaaaatattcctgTGATCAATGTGGCAAAGCTTTTACACAGAGGTCAACTCTTGTTGTTCATAAGAGGTACCATAGTGGGGAAAGACCTTATCTTTGTCCTCGATGTGGTAAAGGCTTTGTTACGAGAACTGTACTTAATACTCATTTAAAATCGTGCCGCTGA
Protein Sequence: MTFRHVWKLVEHLKNSHGINQGFKCDECGKAFRSPMNIARHKLLHTGVKRYTCDICDYACYQKTNLEYHQRRHSKDYFFFCEICRKGFQQKKELVEHGNVHTGLKPYQCKCCDKSYPYKKNLVSHIRIHHPETTKTRTRSYKYKCQFCKERFFNKKLLQQHSKLHKSFPENSKICDLCGLQLSSRSALTHHLKTHTGEKSIICNICGKGFAKWDNLKVHQRIHTGEKPFICSQCGKAFSQKSTLVLHLRYHTGERPYRCSDCGKDFVSSSLLKRHKQTHVNTKNWANHVELQSVGEYKVKLEEALENSDQKFEDSGEKSCKFCEEKFHFVTRLVAHLRIVHGILRPFKCDSCGKTYPQQFMLNAHIKKSHTPKIESCNQCDFMGVSKADVERHRKKLHKEVKYICEICSEVFLTEELLLTHTTMHEFMQFHQCNACGSTFDDLYSLREHNHLYHYNANLGIAKETEDQPPTQHKCDICGKTYKYRSMLKQHKIKGHSDSVACERRRYLCALCGKELKTAKGLEIHTRSHTGEKPYTCEVCGKCFACETLLRTHSVTHTGERKYSCDQCGKAFTQRSTLVVHKRYHSGERPYLCPRCGKGFVTRTVLNTHLKSCR

Similar Transcription Factors

Sequence clustering based on sequence similarity using MMseqs2

100% Identity: iTF_01392198; iTF_01392951; iTF_01393723; iTF_01391391;
90% Identity: iTF_01392198;
80% Identity: -