Basic Information

Insect: Synergus japonicus
Gene Symbol: Sall1
Assembly: GCA_900474275.1
Location: UCOH01000024.1:29610-32234[-]

Transcription Factor Domain

TF Family: zf-C2H2
Domain: zf-C2H2 domain
PFAM: PF00096
TF Group: Zinc-Coordinating Group
Description: The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
Hmmscan Out: # of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc

1 18 4.9e-06 0.00051 20.8 0.2 1 23 23 45 23 45 0.97

2 18 1.5e-05 0.0015 19.3 3.4 1 23 51 73 51 73 0.99

3 18 0.00059 0.061 14.2 0.4 1 23 79 101 79 101 0.96

4 18 0.00019 0.019 15.8 5.2 1 23 107 129 107 130 0.96

5 18 0.0019 0.19 12.6 4.7 1 23 143 165 143 165 0.97

6 18 0.00021 0.022 15.6 1.1 3 23 175 195 174 195 0.98

7 18 8e-08 8.2e-06 26.4 0.1 3 23 203 223 201 223 0.97

8 18 2.4e-06 0.00025 21.7 0.4 1 21 229 249 229 254 0.94

9 18 0.21 22 6.2 1.6 2 23 285 307 284 307 0.96

10 18 3e-06 0.0003 21.5 0.9 1 23 313 336 313 336 0.98

11 18 0.027 2.8 9.0 0.3 3 23 343 364 342 364 0.96

12 18 0.016 1.6 9.7 0.1 1 23 369 391 369 391 0.97

13 18 0.038 3.9 8.5 2.6 1 23 397 420 397 420 0.89

14 18 6.4e-06 0.00066 20.4 3.2 1 23 439 462 439 462 0.96

15 18 0.00046 0.047 14.6 0.1 1 23 473 495 473 495 0.96

16 18 0.0064 0.66 11.0 3.6 1 23 501 523 501 523 0.95

17 18 4.8e-07 4.9e-05 23.9 1.1 1 23 529 551 529 551 0.98

18 18 0.00034 0.035 15.0 0.2 1 21 557 577 557 578 0.93

#	of	c-Evalue	i-Evalue	score	bias	hmm coord from	hmm coord to	ali coord from	ali coord to	env coord from	env coord to	acc
1	18	4.9e-06	0.00051	20.8	0.2	1	23	23	45	23	45	0.97
2	18	1.5e-05	0.0015	19.3	3.4	1	23	51	73	51	73	0.99
3	18	0.00059	0.061	14.2	0.4	1	23	79	101	79	101	0.96
4	18	0.00019	0.019	15.8	5.2	1	23	107	129	107	130	0.96
5	18	0.0019	0.19	12.6	4.7	1	23	143	165	143	165	0.97
6	18	0.00021	0.022	15.6	1.1	3	23	175	195	174	195	0.98
7	18	8e-08	8.2e-06	26.4	0.1	3	23	203	223	201	223	0.97
8	18	2.4e-06	0.00025	21.7	0.4	1	21	229	249	229	254	0.94
9	18	0.21	22	6.2	1.6	2	23	285	307	284	307	0.96
10	18	3e-06	0.0003	21.5	0.9	1	23	313	336	313	336	0.98
11	18	0.027	2.8	9.0	0.3	3	23	343	364	342	364	0.96
12	18	0.016	1.6	9.7	0.1	1	23	369	391	369	391	0.97
13	18	0.038	3.9	8.5	2.6	1	23	397	420	397	420	0.89
14	18	6.4e-06	0.00066	20.4	3.2	1	23	439	462	439	462	0.96
15	18	0.00046	0.047	14.6	0.1	1	23	473	495	473	495	0.96
16	18	0.0064	0.66	11.0	3.6	1	23	501	523	501	523	0.95
17	18	4.8e-07	4.9e-05	23.9	1.1	1	23	529	551	529	551	0.98
18	18	0.00034	0.035	15.0	0.2	1	21	557	577	557	578	0.93

Sequence Information

Coding Sequence: ATGACATTTCGTCACGTATGGAAATTAgttgaacatttaaaaaattcccacGGAATAAATCAAGGTTTCAAATGCGATGAGTGTGGTAAAGCTTTTCGAAGTCCAATGAATATTGCTCGACACAAATTGCTCCATACAGGTGTAAAAAGATACACTTGTGATATTTGCGATTATGCTTGTTATCAGAAAACGAATCTTGAATATCATCAACGAAGGCACTCGAAAgactattttttcttttgcgaGATATGCAGAAAAGGATTTCAACAGAAAAAAGAACTCGTAGAACATGGAAATGTGCATAATGGTCTGAAACCATATCAATGTAAATGCTGTGACAAGTCATACCCATATAAGAAAAATCTAGTATCTCATATCCGAATTCATCATCCTGAAATGACAAGAACAAGGACGAGaagctataaatataaatgtcaattttgtaaggaaagatttttcaataaaaaattacttcaacAACATTCGAAATTACATAAGAGTTTTCCggagaattcaaaaatttgcgATCTGTGTGGTCTGCAGTTATCTTCAAGAAGTGCACTTACTCATCATCTGAAGACACATACTGGAGAGAAATCGATCATCTGTAATATTTGTGGAAAAGGTTTTGCTAAATgggataatttaaaagttcatcaGCGAATACACACAGGGGAAAAGCCATTTATTTGTTCGCAGTGTGGTAAAgctttttctcaaaaatctacACTTGTTCTTCATCTGAGAAACTGGACAAACCATGTTGAACTTCAAAGTGTTGGCGAATACAAGGTCAAGTTAGAGGAAACACTCGAAAATTCAGACCAAAAATTCGAGGACAGTGGCGAAAAGTCCTGTAAATTTTGCGAGGAGAAGTTCCACTTCGTTACCAGATTAGTGGCACACCTACGTATAGTTCATGGAATTCTCAGGCCCTTCAAGTGTGATAGCTGTGGGAAAACGTATCCTCAGCAATTCATGTTGAACGCCCACATTAAAAAATCCCATACACCTAAAATAGAGCCTTGCAATCAATGTGACTTCATGGGAGTCTCAAAAGCAGATGTAGAAagacacagaaaaaaattacacaagGAGGTGAAGTACATCTGTGAAATCTGCAGTGAAGTCTTCCTCACTGAAGAATTATTGTTGACACATACGACCATGCACGAATTTATGCAGTTTCATCAGTGTAACGCATGTGGGAGTACTTTTGATGACCTCTATAGTCTCAGGGAACATAATCACCTTTATCATTATAACGCAAACTTAGGAATAGCAAAAGAAACCGAGGACCAACCACCAACACAACACAAATGTGATATTTGTggaaaaacttataaatatcGATCTATGTTGAAACAACATAAAATAAAGGGTCATTCAGACTCGGTTGCATGTGAGAGGCGAAGATATCTTTGCGCTCTTTGTGGTAAAGAACTAAAAACTGCTAAAGGTTTAGAGATACACACGAGGTCGCATACTGGGGAGAAACCATATACTTGTGAAGTTTGTGGAAAATGCTTTGCTTGTGAAACTTTATTAAGAACCCATAGTGTGACCCATACgggagaaagaaaatattcctgTGATCAATGTGGCAAAGCTTTTACACAGAGGTCAACTCTTGTTGTTCATAAGAGGTACCATAGTGGGGAAAGACCTTATCTTTGTCCTCGATGTGGTAAAGGCTTTGTTACGAGAACTGTACTTAATACTCATTTAAAATCGTGCCGCTGA
Protein Sequence: MTFRHVWKLVEHLKNSHGINQGFKCDECGKAFRSPMNIARHKLLHTGVKRYTCDICDYACYQKTNLEYHQRRHSKDYFFFCEICRKGFQQKKELVEHGNVHNGLKPYQCKCCDKSYPYKKNLVSHIRIHHPEMTRTRTRSYKYKCQFCKERFFNKKLLQQHSKLHKSFPENSKICDLCGLQLSSRSALTHHLKTHTGEKSIICNICGKGFAKWDNLKVHQRIHTGEKPFICSQCGKAFSQKSTLVLHLRNWTNHVELQSVGEYKVKLEETLENSDQKFEDSGEKSCKFCEEKFHFVTRLVAHLRIVHGILRPFKCDSCGKTYPQQFMLNAHIKKSHTPKIEPCNQCDFMGVSKADVERHRKKLHKEVKYICEICSEVFLTEELLLTHTTMHEFMQFHQCNACGSTFDDLYSLREHNHLYHYNANLGIAKETEDQPPTQHKCDICGKTYKYRSMLKQHKIKGHSDSVACERRRYLCALCGKELKTAKGLEIHTRSHTGEKPYTCEVCGKCFACETLLRTHSVTHTGERKYSCDQCGKAFTQRSTLVVHKRYHSGERPYLCPRCGKGFVTRTVLNTHLKSCR

Similar Transcription Factors

Sequence clustering based on sequence similarity using MMseqs2

100% Identity: iTF_01394550;
90% Identity: iTF_01391391; iTF_01392951; iTF_01394550; iTF_01393723;
80% Identity: -