Basic Information

Insect: Synergus laeviventris
Gene Symbol: -
Assembly: GCA_032275145.1
Location: JAUESI010000003.1:11495878-11498607[-]

Transcription Factor Domain

TF Family: zf-C2H2
Domain: zf-C2H2 domain
PFAM: PF00096
TF Group: Zinc-Coordinating Group
Description: The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
Hmmscan Out: # of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc

1 19 5e-06 0.00068 20.7 0.2 1 23 23 45 23 45 0.97

2 19 1.5e-05 0.002 19.2 3.4 1 23 51 73 51 73 0.99

3 19 0.00061 0.083 14.1 1.4 1 23 79 101 79 101 0.96

4 19 0.00019 0.026 15.7 5.2 1 23 107 129 107 130 0.96

5 19 0.00046 0.063 14.5 4.7 1 23 143 165 143 165 0.97

6 19 4.2e-05 0.0058 17.7 1.2 2 23 174 195 173 195 0.97

7 19 8.1e-08 1.1e-05 26.3 0.1 3 23 203 223 201 223 0.97

8 19 3.1e-07 4.2e-05 24.5 0.8 1 23 229 251 229 251 0.97

9 19 2.4e-05 0.0033 18.5 5.8 1 23 257 279 257 279 0.96

10 19 0.22 30 6.1 1.0 2 23 319 341 318 341 0.96

11 19 3e-06 0.00041 21.4 0.9 1 23 347 370 347 370 0.98

12 19 0.022 3 9.2 0.2 2 23 376 398 375 398 0.96

13 19 0.19 26 6.3 0.1 1 23 403 425 403 425 0.92

14 19 0.038 5.2 8.4 2.6 1 23 431 454 431 454 0.89

15 19 6.5e-06 0.00088 20.3 3.2 1 23 472 495 472 495 0.96

16 19 0.00047 0.063 14.5 0.1 1 23 506 528 506 528 0.96

17 19 0.0065 0.88 10.9 3.6 1 23 534 556 534 556 0.95

18 19 4.9e-07 6.6e-05 23.9 1.1 1 23 562 584 562 584 0.98

19 19 0.00034 0.046 14.9 0.2 1 21 590 610 590 611 0.93

#	of	c-Evalue	i-Evalue	score	bias	hmm coord from	hmm coord to	ali coord from	ali coord to	env coord from	env coord to	acc
1	19	5e-06	0.00068	20.7	0.2	1	23	23	45	23	45	0.97
2	19	1.5e-05	0.002	19.2	3.4	1	23	51	73	51	73	0.99
3	19	0.00061	0.083	14.1	1.4	1	23	79	101	79	101	0.96
4	19	0.00019	0.026	15.7	5.2	1	23	107	129	107	130	0.96
5	19	0.00046	0.063	14.5	4.7	1	23	143	165	143	165	0.97
6	19	4.2e-05	0.0058	17.7	1.2	2	23	174	195	173	195	0.97
7	19	8.1e-08	1.1e-05	26.3	0.1	3	23	203	223	201	223	0.97
8	19	3.1e-07	4.2e-05	24.5	0.8	1	23	229	251	229	251	0.97
9	19	2.4e-05	0.0033	18.5	5.8	1	23	257	279	257	279	0.96
10	19	0.22	30	6.1	1.0	2	23	319	341	318	341	0.96
11	19	3e-06	0.00041	21.4	0.9	1	23	347	370	347	370	0.98
12	19	0.022	3	9.2	0.2	2	23	376	398	375	398	0.96
13	19	0.19	26	6.3	0.1	1	23	403	425	403	425	0.92
14	19	0.038	5.2	8.4	2.6	1	23	431	454	431	454	0.89
15	19	6.5e-06	0.00088	20.3	3.2	1	23	472	495	472	495	0.96
16	19	0.00047	0.063	14.5	0.1	1	23	506	528	506	528	0.96
17	19	0.0065	0.88	10.9	3.6	1	23	534	556	534	556	0.95
18	19	4.9e-07	6.6e-05	23.9	1.1	1	23	562	584	562	584	0.98
19	19	0.00034	0.046	14.9	0.2	1	21	590	610	590	611	0.93

Sequence Information

Coding Sequence: ATGACATTTCGTCACGTATGGAAATTAGTGgaacacttaaaaaattcccacGGAATCAATCAAGGTTTTAAATGCGATGAATGTGGCAAAGCTTTCCGAAGTCCAATGAATATTGCTCGACACAAATTGCTCCACACAGGTGTAAAAAGATACACTTGTGATATTTGCGATTATGCTTGTTACCAGAAAACAAATCTTGAATATCATCAACGAAGGCACTCGAAagactattttttcttttgtgagATATGCAGAAAAGGATTTCACCAGAAAAAAGAACTCATAGAACATGGAAATGTGCATGCTGGCCTGAAACCATATCAATGTAAATGCTGTGACAAGTCTTACCcatataagaaaaatctgGTGTCTCATATCCGAATTCATCATCCTGAAACGACAAGAACAAGGACTAGAagctataaatataaatgtcaatattgtaaggaaaaatttttcaataaaaaattacttcaacaACATTCGAAATTACATAAGAGTTTTCCGGAGAATTCAAAGGTATGTGATTTGTGTGGTCTGCAGTTATCTTCGAAAAGTGCACTTACTCATCATCTGAGGACACATACTGGAGAGAAATCGATCATCTGTAATATTTGTGGAAAGGGTTTTGCTAAATGGGATAATTTGAAGGTTCATCAGCGAATACACACAGGAGAAAAGCCATTTATTTGCTCGCAGTGTGGTAAAgctttttctcaaaaatctaCACTTGTTCTTCATCTGAGATATCATACTGGAGAAAGGCCTCATTGTTGTTCGAACTGTGGAAAAGATTTCGTCTCCAGTTCGCTTCTGAAAAGACACAAACAAACTCATATTAATACTaaAAGCTGGGTGAACCATGTTGAACTTCAAAGTCATGCCGAATACAAGGTCAAGTTGGAGGagactcttgaaaattcagaCAATAAATTCGAGAACAGTGGTGAAAAGTCCTGCGAATTTTGTGAGGAGAAGTTCCACTTCGTCACCAGATTAGTGGCACACCTACGTATAGTTCACGGAATTCTCAGGCCCTTCAAGTGTGATAGCTGCGGAAAAACGTATCCTCAGCAATTCATGTTGAACGCCCACATTAAAAAATCCCATACACCTAAAATAATGCCTTGCAATCAATGTGACTTCATGGGAGTCTCAAAAGCAGATGTAGAAAGGCACAGAAAAAGATTACACAAGGAGGTGAAGTACATATGTGAAATATGCAGTGAAGTCTTCCTTGCTGAAGAATTATTGATGACACATACGACCATGCACGAATTTATGCAGTTCCATCAGTGCAACGCATGTGGGAGTACTTTCGATGATCTCTATAGTCTCAGGGAACATAATCACCTTTATCATTATAATGTAAATCTAGGAATAGCAAAACAAACCGAGGATCAACCATCACAACACAAATGTGATATTTGTGgcaaaacttataaatatcGATCTATGTTAAAGCAGCATAAAATAAAGGGTCATTCAGACCCTGTTGCCTGTGAGAGGCGAAGATATCTTTGCGCTCTTTGTGGAAAAGAACTAAAAACTGCTAAAGGTTTAGAGATACACACAAGATCTCATACTGGGGAGAAGCCATATACTTGCGAAGTTTGTGGAAAATGCTTTGCTTGCGAAACTTTATTAAGAACCCACAGTGTGACCCATACGGGAGAACGAAAATATTCCTGTGATCAATGTGGCAAAGCTTTTACGCAAAGGTCAACTCTTGTTGTTCATAAGAGGTACCATAGTGGGGAAAGGCCTTATCTTTGTCCTCGATGTGGTAAAGGCTTTGTTACGAGAACTGTACTTAAtactcatttaaaatcctgcCGCTGA
Protein Sequence: MTFRHVWKLVEHLKNSHGINQGFKCDECGKAFRSPMNIARHKLLHTGVKRYTCDICDYACYQKTNLEYHQRRHSKDYFFFCEICRKGFHQKKELIEHGNVHAGLKPYQCKCCDKSYPYKKNLVSHIRIHHPETTRTRTRSYKYKCQYCKEKFFNKKLLQQHSKLHKSFPENSKVCDLCGLQLSSKSALTHHLRTHTGEKSIICNICGKGFAKWDNLKVHQRIHTGEKPFICSQCGKAFSQKSTLVLHLRYHTGERPHCCSNCGKDFVSSSLLKRHKQTHINTKSWVNHVELQSHAEYKVKLEETLENSDNKFENSGEKSCEFCEEKFHFVTRLVAHLRIVHGILRPFKCDSCGKTYPQQFMLNAHIKKSHTPKIMPCNQCDFMGVSKADVERHRKRLHKEVKYICEICSEVFLAEELLMTHTTMHEFMQFHQCNACGSTFDDLYSLREHNHLYHYNVNLGIAKQTEDQPSQHKCDICGKTYKYRSMLKQHKIKGHSDPVACERRRYLCALCGKELKTAKGLEIHTRSHTGEKPYTCEVCGKCFACETLLRTHSVTHTGERKYSCDQCGKAFTQRSTLVVHKRYHSGERPYLCPRCGKGFVTRTVLNTHLKSCR

Similar Transcription Factors

Sequence clustering based on sequence similarity using MMseqs2

100% Identity: iTF_01394550;
90% Identity: iTF_01392198;
80% Identity: -