Sjap008824.1
Basic Information
- Insect
- Synergus japonicus
- Gene Symbol
- bab1
- Assembly
- GCA_900474275.1
- Location
- UCOH01006266.1:126917-129298[-]
Transcription Factor Domain
- TF Family
- HTH
- Domain
- HTH_psq domain
- PFAM
- PF05225
- TF Group
- Helix-turn-helix
- Description
- This DNA-binding motif is found in four copies in the pipsqueak protein of Drosophila melanogaster [1]. In pipsqueak this domain binds to GAGA sequence [1].
- Hmmscan Out
-
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc 1 5 8.4e-07 0.00081 19.5 0.0 2 38 192 228 191 234 0.86 2 5 2.1e-11 2e-08 34.2 0.0 2 38 242 277 241 283 0.87 3 5 0.0088 8.5 6.6 0.0 7 34 299 325 295 331 0.83 4 5 3.8 3.7e+03 -1.9 0.1 31 45 339 354 339 354 0.87 5 5 9.3e-12 9e-09 35.3 0.0 5 41 357 393 356 395 0.94
Sequence Information
- Coding Sequence
- ATGTCCGAAGAAAACGGCAACGAAAGTTTCTCATTCAAATGGTGCGATTATCAGACTCACTTATCTGGAGTTGTACGCCAGCTCCTCGACGAGGATTGCATGGTGGATGTTACATTGTCTGCAGCGGGGGAACGCATTCAAGCTCATCGTATTGTTCTATGCGCTTGCAgtactttattcaaagAACTTCTAAGTGAGGTGACTGAAGACCatccaacaataattttaagcggTATATCTGCTGAAGATGTCAGGGCGATTGTCGAATTTACATATCAAGGTGAAGCTCATATTCCTGAAGAAAATATTACCACTCTATTGGAAGCAGCACGTTTCTTAAGAATAACTGGTTTAATGGAGTATGATGTGAACGAATCAAATGTTAAATCAAAAGATGGTAATGAAGATAATGCCGAGTCTTTACCAGAATTCAATGAAATGGAAGAAGAAGTTTTGGATGTTTTGGAACAATCGTATGATGAAATGAACGAACAATCGGAACAAAATGCAACAGAAGAAAGTTCTGGAGGCAGAAAAAGGAAGCGGCGGTTTTCTACGAAAAGAGAATATAGCGAAGAAATGCTAGTCGCTGCTATTAATAATTTACGTGAGGGACAGACTTTAATTGAAGctgcaacaaaaaataatatcccTCGTTCCACTTTGTATATGAGAGCTAAAGCATTAggaattcaattaaatgcTTCCAGAAATGAATATCCTCCTGAGTGTATGAGGGCAGCTATAAATTCTGTTATTGGAGGATCGAGTTTGCAACAAGCATCAGAAATGTTTGGTATTCCAAAAACTGTACTCTGGCGACGAATGCAAAAAGAAGGGTACCAGATATTTCGCTCTGAAATGAAGAGAAGTTATGGCTCTGATAAAAGAGAGGCTGCTGTGAAAGCTTTGCAACGCGGAGAAAATCTCACGAAAGTTGCGCTCGAATATCAaATTCCAAAAACAACTCTTTTTAGAGACAAGGCTCGTTTAGTCGACGAAGGAAAATTACCCAGTTCTTTCTGGAAGAAGAGAAAAACTGAAAACGAATCAATAAAAAGACTCTTATTGGATGAAGCCGTGGCTGCTtgtaaaagtggaaaaatgtCGCAAGCAGCTGCTTCCGTATTTTATCGTATTCCAAAAACTACGATATGGAGACATTTGCAGCAagataatacaaaaattaaaaagaaaagaaagtctAATGATCCTGTTTCGGCTGTGGAAGATAAAGTCGAAACTGATACCGAATATACATATTGCGAGgTTGCTTCCGAAATTCCAGTGACTTATACAATTGAGGATAGTAGCATTTCTGGAGAGCAAGTTATAGTTTTTACGCCTGAAGAGGTcgaagaattgaatttggaTGGCCGTACACAAATCATTATCAGTTCGgatTCTACTCAGGAATTCGTTACGAGCCCTACAAATGTCGAAGATGATTCGAATTACAGTTCGAATAAAAGTTAA
- Protein Sequence
- MSEENGNESFSFKWCDYQTHLSGVVRQLLDEDCMVDVTLSAAGERIQAHRIVLCACSTLFKELLSEVTEDHPTIILSGISAEDVRAIVEFTYQGEAHIPEENITTLLEAARFLRITGLMEYDVNESNVKSKDGNEDNAESLPEFNEMEEEVLDVLEQSYDEMNEQSEQNATEESSGGRKRKRRFSTKREYSEEMLVAAINNLREGQTLIEAATKNNIPRSTLYMRAKALGIQLNASRNEYPPECMRAAINSVIGGSSLQQASEMFGIPKTVLWRRMQKEGYQIFRSEMKRSYGSDKREAAVKALQRGENLTKVALEYQIPKTTLFRDKARLVDEGKLPSSFWKKRKTENESIKRLLLDEAVAACKSGKMSQAAASVFYRIPKTTIWRHLQQDNTKIKKKRKSNDPVSAVEDKVETDTEYTYCEVASEIPVTYTIEDSSISGEQVIVFTPEEVEELNLDGRTQIIISSDSTQEFVTSPTNVEDDSNYSSNKS
Similar Transcription Factors
Sequence clustering based on sequence similarity using MMseqs2
- 100% Identity
- iTF_01392906;
- 90% Identity
- iTF_01393672; iTF_01393419; iTF_01394479; iTF_01392146; iTF_01394196; iTF_01390455; iTF_01391319; iTF_01391006; iTF_01390112; iTF_01392683; iTF_01392906; iTF_01389341; iTF_01389588;
- 80% Identity
- iTF_01392146;