Smag013774.1
Basic Information
- Insect
- Synergus magnus
- Gene Symbol
- Trl
- Assembly
- GCA_032275165.1
- Location
- JAUESH010000041.1:4294857-4297339[-]
Transcription Factor Domain
- TF Family
- HTH
- Domain
- HTH_psq domain
- PFAM
- PF05225
- TF Group
- Helix-turn-helix
- Description
- This DNA-binding motif is found in four copies in the pipsqueak protein of Drosophila melanogaster [1]. In pipsqueak this domain binds to GAGA sequence [1].
- Hmmscan Out
-
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc 1 5 3.1e-07 0.00029 21.3 0.1 2 38 192 228 191 234 0.87 2 5 2.9e-11 2.7e-08 34.2 0.0 2 38 242 277 241 283 0.87 3 5 0.012 11 6.6 0.0 7 34 299 325 295 331 0.83 4 5 7.9 7.3e+03 -2.4 0.1 31 45 339 354 339 354 0.85 5 5 1.3e-11 1.2e-08 35.3 0.0 5 41 357 393 356 395 0.94
Sequence Information
- Coding Sequence
- ATGTCTGAAGTCAACATCGACGATAGCTTCTCGTTCAAATGGTGTGATTATCAGAATCACTTATCTGGAGTTGTACGCCAGCTCCTCGAGGAGGATTGCATGGTGGATGTCACATTGTCTGCAGCGGGGGAACGCATTCAAGCTCATCGTATTGTTCTATGCGCTTGCAGTActttattcaaagaacTTCTAAGTCAGGTAACTGAAGACCATccaacaataattttaagcggTATATCTGCTGAAGATGTCAGGGCTATTGTCGAATTTACATATCAAGGAGAAGCTCATATTCCTGAAGAAAATATTAGCACTCTATTGGAAGCAGCacgtttcttaaaaataactgGTTTAATGGagtatGATGTGAACGAATCAAATGTAAAATCAAAAGACGTAAATGAAGATAATGCCGAATCCGTGCCAGAATTCAATGAAATGGAAGAAGAAGTTTTGGATGTTTTGGAACAATCGTATGATGATATGAACGAACAATCGGAACAGAATGCAACAGAAGAAAGTTTTGaaggtaaaaaaagaaagcgaCGTTTTTCTACGAAAAGAGAATATAGCGAAGAAATGTTAGCCGCCGCTATTAATAATTTACGTGAGGGACAGACTTTAATCGAAgctgcaacaaaaaataatatcccTCGTTCCACTTTGTATATGCGAGCTAAAGCATTaggaattcaattaaatgcttCCAGGAATGAATATCCTCCGGAGTGTATGAGGGCAGCTATAAATTCTGTTATTGGAGGATCGAGTTTACAACAAGCATCAGAGATGTTTGGTATTCCAAAAACTGTACTCTGGCGACGAATGCAAAAAGAAGGCTACCAGATATTTCGTTCCGAAATGAAGAGAAGTTATGGTTCGGATAAAAGAGAGGCTGCTGTGAAAGCTTTGCAACGCGGAGAAAATCTCACGAAAGTCGCGCtcgaatatcaaaTTCCAAAGACGACTCTTTTTAGAGACAAGGCTCGTCTAGTCGATGAAGGAAAACTACCCACCTCTTTCTGGAAGAAGAGGAAAACTGAAAACGAATCGATAAAAAGACTCCTATTGGATGAAGCCGTGGCTGCCtgtaaaagtggaaaaatgtCACAAGCAGCTGCTTCCGTATTTTATCGTATTCCAAAAACTACGATATGGAGGCATTTGCAGCaagataatacaaaaattaaaaagaaaacaaagtgTAATGATCCTGTTTCGGCCGTGGAAGATAAAGTCGAAACGGATACCGAATATACATATTGTGAGgtTGCTTCTGAAATCCCAGTGACTTATACAATTGATGATAATGGAATTTCTGGAGAGCAAGTTATAGTTTTTACGCCTGAAGAGGTCGACGAATTGAATTTGGATGGCCGTACACAAATCATTATCAGTTCGgatTCAAATCAGGAATTCGTTACGAGCCCTACGAATGTCGAAGATGATTCTAATTacagtttaaataaaagttaa
- Protein Sequence
- MSEVNIDDSFSFKWCDYQNHLSGVVRQLLEEDCMVDVTLSAAGERIQAHRIVLCACSTLFKELLSQVTEDHPTIILSGISAEDVRAIVEFTYQGEAHIPEENISTLLEAARFLKITGLMEYDVNESNVKSKDVNEDNAESVPEFNEMEEEVLDVLEQSYDDMNEQSEQNATEESFEGKKRKRRFSTKREYSEEMLAAAINNLREGQTLIEAATKNNIPRSTLYMRAKALGIQLNASRNEYPPECMRAAINSVIGGSSLQQASEMFGIPKTVLWRRMQKEGYQIFRSEMKRSYGSDKREAAVKALQRGENLTKVALEYQIPKTTLFRDKARLVDEGKLPTSFWKKRKTENESIKRLLLDEAVAACKSGKMSQAAASVFYRIPKTTIWRHLQQDNTKIKKKTKCNDPVSAVEDKVETDTEYTYCEVASEIPVTYTIDDNGISGEQVIVFTPEEVDELNLDGRTQIIISSDSNQEFVTSPTNVEDDSNYSLNKS
Similar Transcription Factors
Sequence clustering based on sequence similarity using MMseqs2
- 100% Identity
- iTF_01392906;
- 90% Identity
- iTF_01391875;
- 80% Identity
- iTF_01393672;