Scon012451.1
Basic Information
- Insect
- Synergus coniferae
- Gene Symbol
- Trl
- Assembly
- GCA_032164275.1
- Location
- JAUEJJ010000045.1:5736773-5739181[-]
Transcription Factor Domain
- TF Family
- HTH
- Domain
- HTH_psq domain
- PFAM
- PF05225
- TF Group
- Helix-turn-helix
- Description
- This DNA-binding motif is found in four copies in the pipsqueak protein of Drosophila melanogaster [1]. In pipsqueak this domain binds to GAGA sequence [1].
- Hmmscan Out
-
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc 1 5 9.4e-08 0.00012 22.3 0.1 2 42 192 232 191 234 0.89 2 5 5.9e-12 7.5e-09 35.8 0.0 2 42 242 282 241 285 0.87 3 5 0.0077 9.8 6.6 0.0 7 34 299 325 295 331 0.83 4 5 1.2 1.5e+03 -0.4 0.1 31 45 339 354 338 354 0.92 5 5 3e-11 3.8e-08 33.5 0.0 5 39 357 391 356 395 0.94
Sequence Information
- Coding Sequence
- ATGTCCGAAGTCAACGTCGACGAAAGTTTTTCGTACAAATGGTGCGATTATCAGAATCACTTATCTGGAGTTGTACGCCAGCTCCTGGAGGAGGATTGCATGGTGGATGTCACCTTGTCTGCAGCAGGGGAACGCATTCAAGCTCATCGTATCGTTCTATGCGCTTGCAgtactttattcaaaGAACTTCTAAGTCAGGTGACTGAAGACCAtccaacaataattttaagcgGTATATCTGCTGAAGATGTCAGAGCGATTGTCGAATTTACATATCAAGGAGAAGCTTATATTCCTGAAGAAAATATTAGCACTCTATTGGAAGCAGCacgtttcttaaaaataacaGGTTTAATGGAGTATGATGTGAACgaatcaaatataaaatcaaaagatGTAAATGAAGATAATGTTGAATCCTTACCAGAATTCAATGAAATGGAAGAAGAAGTTTTGGATGTTTTGGAACAATCGTATGATGACATAAACGAACAATTGGAACAGAATGCAACAGAAGAAAGTTCTGgagggaaaaaaagaaagcggCGTCTTTCTACAAAAAGAGAATATAGCGAAGAAATGTTAGCCGCCGCTATTAATAATTTACGTGAGGGACAGACTTTAATTGAGgctgcaacaaaaaataatatcccTCGTTCCACTTTGTATATGCGAGCTAAATCATTaggaattcaattaaatgcttCCAGAAATGAATATCCTCCAGAATGCATGAGGGCAGCTATAAATGCTGTTCTTGGAGGATCGAGTTTGCAACACGCATCAGAGATGTTTGGTATTCCAAAAACTGTACTCTGGCGACGAATGCAGAAAGAAGGCTATCAGATGCTTCGTTCTGAAATGAAGAGAAGTTATGGCTCGGATAAAAGAGAGGCTGCTGTGAAAGCTTTGCAACGCGGAGAAAATCTCACGAAAGTTGCGCTCGAATATCAaATCCCAAAGACAACTCTTTTTAGAGACAAGGCTCGCTTAGTCGACGAAGGAAAATTGCCTACCTCTTTTTGGAAGAAGAGGAAAACTGAAAACGAATCGGTAAAAAGACTCCTATTAGATAAAGCCGTGGCTGCTtgtaaaagtggaaaaatgtCACAAGCAGCTGCTTCCGTATTTTATCGTATTCCAAAAACTACGATATGGAGACATTTGCAGCAAGATAatagaaaagttaaaaagaaaacaaaaccCAATGATTCTATTTCGGCCGTGGAAGATAAAGTTGAAACGGAaactgaatataaatattgcgAGgttGCTTCCGAAATACCAGTGACTTTGATTGATGATAATGGCATTTCTGGAGAGCAAGTTATAGTTTTAATGCCTGAAGGGGCCGAAGAATTGAATTTAGATGGTCATACACAAATCATTATCAGTTCGGATTCAAATCAGGAATTCGTTACGAGCCCTACAAATGTTGAAGAAGATTCTAATTACAGTTCGAATAAAAGTTAA
- Protein Sequence
- MSEVNVDESFSYKWCDYQNHLSGVVRQLLEEDCMVDVTLSAAGERIQAHRIVLCACSTLFKELLSQVTEDHPTIILSGISAEDVRAIVEFTYQGEAYIPEENISTLLEAARFLKITGLMEYDVNESNIKSKDVNEDNVESLPEFNEMEEEVLDVLEQSYDDINEQLEQNATEESSGGKKRKRRLSTKREYSEEMLAAAINNLREGQTLIEAATKNNIPRSTLYMRAKSLGIQLNASRNEYPPECMRAAINAVLGGSSLQHASEMFGIPKTVLWRRMQKEGYQMLRSEMKRSYGSDKREAAVKALQRGENLTKVALEYQIPKTTLFRDKARLVDEGKLPTSFWKKRKTENESVKRLLLDKAVAACKSGKMSQAAASVFYRIPKTTIWRHLQQDNRKVKKKTKPNDSISAVEDKVETETEYKYCEVASEIPVTLIDDNGISGEQVIVLMPEGAEELNLDGHTQIIISSDSNQEFVTSPTNVEEDSNYSSNKS
Similar Transcription Factors
Sequence clustering based on sequence similarity using MMseqs2
- 100% Identity
- iTF_01392906;
- 90% Identity
- iTF_01391875;
- 80% Identity
- iTF_01389588;