Stip012324.1
Basic Information
- Insect
- Synanthedon tipuliformis
- Gene Symbol
- -
- Assembly
- GCA_947623395.1
- Location
- OX392418.1:1678525-1679832[-]
Transcription Factor Domain
- TF Family
- zf-GAGA
- Domain
- zf-GAGA domain
- PFAM
- PF09237
- TF Group
- Zinc-Coordinating Group
- Description
- Members of this family bind to a 5'-GAGAG-3' DNA consensus binding site, and contain a Cys2-His2 zinc finger core as well as an N-terminal extension containing two highly basic regions. The zinc finger core binds in the DNA major groove and recognises the first three GAG bases of the consensus in a manner similar to that seen in other classical zinc finger-DNA complexes. The second basic region forms a helix that interacts in the major groove recognising the last G of the consensus, while the first basic region wraps around the DNA in the minor groove and recognises the A in the fourth position of the consensus sequence [1].
- Hmmscan Out
-
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc 1 12 1.1 3.9e+03 -1.7 0.1 27 43 9 25 7 33 0.70 2 12 0.038 1.4e+02 3.0 0.0 22 45 32 55 28 62 0.86 3 12 0.013 47 4.5 0.1 24 48 133 157 127 162 0.85 4 12 0.0049 18 5.8 0.1 20 50 157 188 153 192 0.84 5 12 0.037 1.3e+02 3.0 0.1 24 48 193 217 188 222 0.87 6 12 0.00052 1.9 8.9 0.0 24 52 224 252 220 254 0.91 7 12 0.44 1.6e+03 -0.4 0.1 26 43 255 272 252 278 0.84 8 12 0.22 7.8e+02 0.6 0.1 23 44 281 302 260 310 0.76 9 12 0.14 5e+02 1.2 0.0 24 48 311 335 304 339 0.81 10 12 0.022 80 3.7 0.1 23 48 341 366 336 369 0.85 11 12 0.17 6e+02 0.9 0.1 25 44 376 395 372 403 0.83 12 12 0.00063 2.3 8.7 0.0 24 48 406 430 400 433 0.87
Sequence Information
- Coding Sequence
- ATGAAGACGCACTTTAAACACCGCTGTGAAGTATGCAATAGAGATTATCAGAGCAAAGGTGAATTGCGTAGGCACGAAATTATGCATAAGGATGAGAGAAAGTTTAAGTGCTCAATATGTAATAATGGGTTTACACTGAGCAGAAGTTTGAAGGCTCACATGAAAACACACAAGGACAGAACACCGCATGAGCCCCGCAATAGACAAATGTTGATGCATGCTGAGATAAAAGAGCGCGATATATGCAAGAAGACCTTTAAACACAAACAGAGTTTACACATGCATATGTCAGATGTACATTTGGGCATTAAGTTTGAGTGCGACATATGCAAGAAGACATTTAATTTCAAGCAAGGTATACACCAGCACATGTTGGCTTTACATTCGGACCTTCCACCCACTCAGTGCAACATTTGCATGAAGACATTTAAATATAAACAGAGTTTTAAGAGGCACATGTCGGCTGTACATTCGGACCTTCCACACACTCAGTGCGACATTTGCAAGAAGACATTTAAATCCAAGGATAATGTACGCCAGCACATATTGGCTGTACATTTGGCCTTCAAGGCAATACCCACTCAGTGCGACATTTGCAATAAGACATTTAAATACAAGCGAAGTCTACACGACCACATGTTTGCTGTACATTTGGTCTCTGAGTTAATGCCCTTTGAATGTGACATTTGCAAGAAGACATTTAAATATAAACAGAATTTAAGCAGGCACATGTCGGATGTACATTTGGCTCTACCACACACTCATTGCGACATTTGCATGAAGACATTTAAATCCAAGCATAAAATGCGCCAGCATAAGTTGGCTGTACATTCGAATCTTTCACCCACTCAGTGCGACATTTGCATGAAGACATTTAAATCCAAAAATTATATACACCAGCACATGTTAGCTGTACATTCGGACCTTCCACCCACTCAGTGCGACATTTGCAAGAAGACATTTAAATCCAAGCAAAGTCTACACTCCCACATGTTTGCTGTACATTTGAGCTCTGAGTTAATGCCCATTGAATGTGACATTTGCAACAGGACATTTACATACAAACATAATTTAAGTAGGCATAAGTCGACTGTACATTTGGGCTTGAAGCTAACAGATACTGCCACTGAATGTGACATTTGCAAGAAGACATTTAAATGCAAACAGAGTTTAAGCAGGCACATGTTGGGTGTACATTTGGGCTCTGAGTTAATGCCCTTTGAATGTGACATTTGCAAGAAGACATTTAAATACAAACAGAATTTAAGAAGGCATAAGTCGACTGTACATTTGGGCTTGAAGAAGTGA
- Protein Sequence
- MKTHFKHRCEVCNRDYQSKGELRRHEIMHKDERKFKCSICNNGFTLSRSLKAHMKTHKDRTPHEPRNRQMLMHAEIKERDICKKTFKHKQSLHMHMSDVHLGIKFECDICKKTFNFKQGIHQHMLALHSDLPPTQCNICMKTFKYKQSFKRHMSAVHSDLPHTQCDICKKTFKSKDNVRQHILAVHLAFKAIPTQCDICNKTFKYKRSLHDHMFAVHLVSELMPFECDICKKTFKYKQNLSRHMSDVHLALPHTHCDICMKTFKSKHKMRQHKLAVHSNLSPTQCDICMKTFKSKNYIHQHMLAVHSDLPPTQCDICKKTFKSKQSLHSHMFAVHLSSELMPIECDICNRTFTYKHNLSRHKSTVHLGLKLTDTATECDICKKTFKCKQSLSRHMLGVHLGSELMPFECDICKKTFKYKQNLRRHKSTVHLGLKK
Similar Transcription Factors
Sequence clustering based on sequence similarity using MMseqs2
- 100% Identity
- iTF_01388743; iTF_01388696;
- 90% Identity
- iTF_01388743; iTF_01388696;
- 80% Identity
- iTF_01388743; iTF_01388696;