Basic Information

Insect: Synanthedon tipuliformis
Gene Symbol: -
Assembly: GCA_947623395.1
Location: OX392418.1:1678525-1679832[-]

Transcription Factor Domain

TF Family: zf-C2H2
Domain: zf-C2H2 domain
PFAM: PF00096
TF Group: Zinc-Coordinating Group
Description: The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
Hmmscan Out: # of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc

1 14 0.00031 0.018 15.7 1.2 1 23 7 29 7 29 0.97

2 14 7.4e-06 0.00043 20.8 1.4 1 23 35 57 35 57 0.99

3 14 0.0041 0.24 12.2 2.8 5 23 81 100 80 100 0.91

4 14 0.00074 0.043 14.5 1.7 1 23 105 128 105 128 0.94

5 14 0.00019 0.011 16.4 2.2 2 23 135 157 134 157 0.94

6 14 3.7e-06 0.00022 21.8 0.6 2 23 164 186 163 186 0.94

7 14 3.6e-05 0.0021 18.7 2.5 2 23 195 217 194 217 0.92

8 14 6.6e-07 3.8e-05 24.1 1.7 1 23 225 248 225 248 0.94

9 14 0.1 6 7.8 4.9 3 23 256 277 254 277 0.91

10 14 0.0064 0.38 11.6 1.7 2 23 284 306 283 306 0.94

11 14 3.4e-05 0.002 18.7 3.0 2 23 313 335 312 335 0.92

12 14 5.5e-06 0.00032 21.3 2.6 2 23 344 366 343 366 0.96

13 14 0.0009 0.053 14.3 2.8 2 23 377 399 376 399 0.94

14 14 8.8e-07 5.1e-05 23.7 3.2 1 23 407 430 407 430 0.97

#	of	c-Evalue	i-Evalue	score	bias	hmm coord from	hmm coord to	ali coord from	ali coord to	env coord from	env coord to	acc
1	14	0.00031	0.018	15.7	1.2	1	23	7	29	7	29	0.97
2	14	7.4e-06	0.00043	20.8	1.4	1	23	35	57	35	57	0.99
3	14	0.0041	0.24	12.2	2.8	5	23	81	100	80	100	0.91
4	14	0.00074	0.043	14.5	1.7	1	23	105	128	105	128	0.94
5	14	0.00019	0.011	16.4	2.2	2	23	135	157	134	157	0.94
6	14	3.7e-06	0.00022	21.8	0.6	2	23	164	186	163	186	0.94
7	14	3.6e-05	0.0021	18.7	2.5	2	23	195	217	194	217	0.92
8	14	6.6e-07	3.8e-05	24.1	1.7	1	23	225	248	225	248	0.94
9	14	0.1	6	7.8	4.9	3	23	256	277	254	277	0.91
10	14	0.0064	0.38	11.6	1.7	2	23	284	306	283	306	0.94
11	14	3.4e-05	0.002	18.7	3.0	2	23	313	335	312	335	0.92
12	14	5.5e-06	0.00032	21.3	2.6	2	23	344	366	343	366	0.96
13	14	0.0009	0.053	14.3	2.8	2	23	377	399	376	399	0.94
14	14	8.8e-07	5.1e-05	23.7	3.2	1	23	407	430	407	430	0.97

Sequence Information

Coding Sequence: ATGAAGACGCACTTTAAACACCGCTGTGAAGTATGCAATAGAGATTATCAGAGCAAAGGTGAATTGCGTAGGCACGAAATTATGCATAAGGATGAGAGAAAGTTTAAGTGCTCAATATGTAATAATGGGTTTACACTGAGCAGAAGTTTGAAGGCTCACATGAAAACACACAAGGACAGAACACCGCATGAGCCCCGCAATAGACAAATGTTGATGCATGCTGAGATAAAAGAGCGCGATATATGCAAGAAGACCTTTAAACACAAACAGAGTTTACACATGCATATGTCAGATGTACATTTGGGCATTAAGTTTGAGTGCGACATATGCAAGAAGACATTTAATTTCAAGCAAGGTATACACCAGCACATGTTGGCTTTACATTCGGACCTTCCACCCACTCAGTGCAACATTTGCATGAAGACATTTAAATATAAACAGAGTTTTAAGAGGCACATGTCGGCTGTACATTCGGACCTTCCACACACTCAGTGCGACATTTGCAAGAAGACATTTAAATCCAAGGATAATGTACGCCAGCACATATTGGCTGTACATTTGGCCTTCAAGGCAATACCCACTCAGTGCGACATTTGCAATAAGACATTTAAATACAAGCGAAGTCTACACGACCACATGTTTGCTGTACATTTGGTCTCTGAGTTAATGCCCTTTGAATGTGACATTTGCAAGAAGACATTTAAATATAAACAGAATTTAAGCAGGCACATGTCGGATGTACATTTGGCTCTACCACACACTCATTGCGACATTTGCATGAAGACATTTAAATCCAAGCATAAAATGCGCCAGCATAAGTTGGCTGTACATTCGAATCTTTCACCCACTCAGTGCGACATTTGCATGAAGACATTTAAATCCAAAAATTATATACACCAGCACATGTTAGCTGTACATTCGGACCTTCCACCCACTCAGTGCGACATTTGCAAGAAGACATTTAAATCCAAGCAAAGTCTACACTCCCACATGTTTGCTGTACATTTGAGCTCTGAGTTAATGCCCATTGAATGTGACATTTGCAACAGGACATTTACATACAAACATAATTTAAGTAGGCATAAGTCGACTGTACATTTGGGCTTGAAGCTAACAGATACTGCCACTGAATGTGACATTTGCAAGAAGACATTTAAATGCAAACAGAGTTTAAGCAGGCACATGTTGGGTGTACATTTGGGCTCTGAGTTAATGCCCTTTGAATGTGACATTTGCAAGAAGACATTTAAATACAAACAGAATTTAAGAAGGCATAAGTCGACTGTACATTTGGGCTTGAAGAAGTGA
Protein Sequence: MKTHFKHRCEVCNRDYQSKGELRRHEIMHKDERKFKCSICNNGFTLSRSLKAHMKTHKDRTPHEPRNRQMLMHAEIKERDICKKTFKHKQSLHMHMSDVHLGIKFECDICKKTFNFKQGIHQHMLALHSDLPPTQCNICMKTFKYKQSFKRHMSAVHSDLPHTQCDICKKTFKSKDNVRQHILAVHLAFKAIPTQCDICNKTFKYKRSLHDHMFAVHLVSELMPFECDICKKTFKYKQNLSRHMSDVHLALPHTHCDICMKTFKSKHKMRQHKLAVHSNLSPTQCDICMKTFKSKNYIHQHMLAVHSDLPPTQCDICKKTFKSKQSLHSHMFAVHLSSELMPIECDICNRTFTYKHNLSRHKSTVHLGLKLTDTATECDICKKTFKCKQSLSRHMLGVHLGSELMPFECDICKKTFKYKQNLRRHKSTVHLGLKK

Similar Transcription Factors

Sequence clustering based on sequence similarity using MMseqs2

100% Identity: iTF_01389089;
90% Identity: iTF_01389089;
80% Identity: iTF_01389089;