Stip012324.1
Basic Information
- Insect
- Synanthedon tipuliformis
- Gene Symbol
- -
- Assembly
- GCA_947623395.1
- Location
- OX392418.1:1678525-1679832[-]
Transcription Factor Domain
- TF Family
- zf-BED
- Domain
- zf-BED domain
- PFAM
- PF02892
- TF Group
- Zinc-Coordinating Group
- Description
- The BED finger, which was named after the Drosophila proteins BEAF and DREF, is found in one or more copies in cellular regulatory factors and transposases from plants, animals and fungi. The BED finger is an about 50 to 60 amino acid residues domain that contains a characteristic motif with two highly conserved aromatic positions, as well as a shared pattern of cysteines and histidines that is predicted to form a zinc finger. As diverse BED fingers are able to bind DNA, it has been suggested that DNA-binding is the general function of this domain [3].
- Hmmscan Out
-
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc 1 14 0.25 1.3e+02 3.0 0.9 13 30 3 20 2 27 0.81 2 14 0.033 17 5.8 2.2 12 41 30 56 22 63 0.79 3 14 5.5 2.8e+03 -1.3 0.3 21 29 81 89 80 101 0.73 4 14 0.067 34 4.8 0.5 16 32 104 120 102 129 0.82 5 14 0.00023 0.12 12.7 2.8 17 44 134 158 120 158 0.84 6 14 0.013 6.3 7.2 0.2 18 39 164 182 159 187 0.81 7 14 0.0091 4.6 7.6 0.1 18 31 195 208 189 223 0.78 8 14 8.5e-05 0.043 14.1 0.1 18 43 226 248 224 249 0.93 9 14 0.061 31 5.0 1.4 19 35 256 269 253 278 0.81 10 14 0.051 26 5.2 1.9 18 30 284 296 271 307 0.82 11 14 0.02 10 6.5 2.1 17 39 312 336 298 341 0.76 12 14 0.0028 1.4 9.2 2.1 17 38 343 361 338 367 0.87 13 14 0.015 7.6 6.9 3.3 11 39 370 395 366 400 0.81 14 14 0.0015 0.76 10.1 0.5 18 38 408 425 406 430 0.87
Sequence Information
- Coding Sequence
- ATGAAGACGCACTTTAAACACCGCTGTGAAGTATGCAATAGAGATTATCAGAGCAAAGGTGAATTGCGTAGGCACGAAATTATGCATAAGGATGAGAGAAAGTTTAAGTGCTCAATATGTAATAATGGGTTTACACTGAGCAGAAGTTTGAAGGCTCACATGAAAACACACAAGGACAGAACACCGCATGAGCCCCGCAATAGACAAATGTTGATGCATGCTGAGATAAAAGAGCGCGATATATGCAAGAAGACCTTTAAACACAAACAGAGTTTACACATGCATATGTCAGATGTACATTTGGGCATTAAGTTTGAGTGCGACATATGCAAGAAGACATTTAATTTCAAGCAAGGTATACACCAGCACATGTTGGCTTTACATTCGGACCTTCCACCCACTCAGTGCAACATTTGCATGAAGACATTTAAATATAAACAGAGTTTTAAGAGGCACATGTCGGCTGTACATTCGGACCTTCCACACACTCAGTGCGACATTTGCAAGAAGACATTTAAATCCAAGGATAATGTACGCCAGCACATATTGGCTGTACATTTGGCCTTCAAGGCAATACCCACTCAGTGCGACATTTGCAATAAGACATTTAAATACAAGCGAAGTCTACACGACCACATGTTTGCTGTACATTTGGTCTCTGAGTTAATGCCCTTTGAATGTGACATTTGCAAGAAGACATTTAAATATAAACAGAATTTAAGCAGGCACATGTCGGATGTACATTTGGCTCTACCACACACTCATTGCGACATTTGCATGAAGACATTTAAATCCAAGCATAAAATGCGCCAGCATAAGTTGGCTGTACATTCGAATCTTTCACCCACTCAGTGCGACATTTGCATGAAGACATTTAAATCCAAAAATTATATACACCAGCACATGTTAGCTGTACATTCGGACCTTCCACCCACTCAGTGCGACATTTGCAAGAAGACATTTAAATCCAAGCAAAGTCTACACTCCCACATGTTTGCTGTACATTTGAGCTCTGAGTTAATGCCCATTGAATGTGACATTTGCAACAGGACATTTACATACAAACATAATTTAAGTAGGCATAAGTCGACTGTACATTTGGGCTTGAAGCTAACAGATACTGCCACTGAATGTGACATTTGCAAGAAGACATTTAAATGCAAACAGAGTTTAAGCAGGCACATGTTGGGTGTACATTTGGGCTCTGAGTTAATGCCCTTTGAATGTGACATTTGCAAGAAGACATTTAAATACAAACAGAATTTAAGAAGGCATAAGTCGACTGTACATTTGGGCTTGAAGAAGTGA
- Protein Sequence
- MKTHFKHRCEVCNRDYQSKGELRRHEIMHKDERKFKCSICNNGFTLSRSLKAHMKTHKDRTPHEPRNRQMLMHAEIKERDICKKTFKHKQSLHMHMSDVHLGIKFECDICKKTFNFKQGIHQHMLALHSDLPPTQCNICMKTFKYKQSFKRHMSAVHSDLPHTQCDICKKTFKSKDNVRQHILAVHLAFKAIPTQCDICNKTFKYKRSLHDHMFAVHLVSELMPFECDICKKTFKYKQNLSRHMSDVHLALPHTHCDICMKTFKSKHKMRQHKLAVHSNLSPTQCDICMKTFKSKNYIHQHMLAVHSDLPPTQCDICKKTFKSKQSLHSHMFAVHLSSELMPIECDICNRTFTYKHNLSRHKSTVHLGLKLTDTATECDICKKTFKCKQSLSRHMLGVHLGSELMPFECDICKKTFKYKQNLRRHKSTVHLGLKK
Similar Transcription Factors
Sequence clustering based on sequence similarity using MMseqs2
- 100% Identity
- iTF_01389089;
- 90% Identity
- iTF_01389089;
- 80% Identity
- iTF_01389089;