Basic Information

Insect: Synanthedon tipuliformis
Gene Symbol: -
Assembly: GCA_947623395.1
Location: OX392434.1:3839370-3861396[-]

Transcription Factor Domain

TF Family: zf-C2H2
Domain: zf-C2H2 domain
PFAM: PF00096
TF Group: Zinc-Coordinating Group
Description: The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
Hmmscan Out: # of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc

1 17 0.58 34 5.4 0.1 2 23 474 495 473 495 0.93

2 17 0.01 0.61 10.9 0.1 1 23 505 528 505 528 0.96

3 17 0.074 4.3 8.3 3.6 2 23 746 767 745 767 0.95

4 17 5.3 3.1e+02 2.4 0.7 1 23 779 803 779 803 0.90

5 17 0.00044 0.026 15.2 0.6 2 23 810 833 809 833 0.97

6 17 0.086 5 8.0 0.2 1 23 839 861 839 861 0.93

7 17 0.027 1.6 9.6 3.4 1 23 867 889 867 889 0.98

8 17 1.4 83 4.2 0.2 2 19 900 917 899 920 0.89

9 17 0.0053 0.31 11.9 0.2 1 23 1000 1022 1000 1022 0.98

10 17 3.3 1.9e+02 3.1 6.3 1 23 1029 1051 1029 1051 0.95

11 17 0.0017 0.1 13.4 1.8 1 23 1087 1110 1087 1110 0.95

12 17 0.0021 0.13 13.1 0.4 1 23 1117 1140 1117 1140 0.97

13 17 0.014 0.84 10.5 0.1 2 23 1161 1183 1160 1183 0.96

14 17 0.0027 0.16 12.8 0.2 3 23 1219 1240 1217 1240 0.93

15 17 0.00013 0.0078 16.9 3.0 1 23 1272 1294 1272 1294 0.99

16 17 0.00015 0.0088 16.7 0.1 1 23 1300 1322 1300 1322 0.97

17 17 0.00011 0.0063 17.2 0.6 3 23 1330 1351 1328 1351 0.95

#	of	c-Evalue	i-Evalue	score	bias	hmm coord from	hmm coord to	ali coord from	ali coord to	env coord from	env coord to	acc
1	17	0.58	34	5.4	0.1	2	23	474	495	473	495	0.93
2	17	0.01	0.61	10.9	0.1	1	23	505	528	505	528	0.96
3	17	0.074	4.3	8.3	3.6	2	23	746	767	745	767	0.95
4	17	5.3	3.1e+02	2.4	0.7	1	23	779	803	779	803	0.90
5	17	0.00044	0.026	15.2	0.6	2	23	810	833	809	833	0.97
6	17	0.086	5	8.0	0.2	1	23	839	861	839	861	0.93
7	17	0.027	1.6	9.6	3.4	1	23	867	889	867	889	0.98
8	17	1.4	83	4.2	0.2	2	19	900	917	899	920	0.89
9	17	0.0053	0.31	11.9	0.2	1	23	1000	1022	1000	1022	0.98
10	17	3.3	1.9e+02	3.1	6.3	1	23	1029	1051	1029	1051	0.95
11	17	0.0017	0.1	13.4	1.8	1	23	1087	1110	1087	1110	0.95
12	17	0.0021	0.13	13.1	0.4	1	23	1117	1140	1117	1140	0.97
13	17	0.014	0.84	10.5	0.1	2	23	1161	1183	1160	1183	0.96
14	17	0.0027	0.16	12.8	0.2	3	23	1219	1240	1217	1240	0.93
15	17	0.00013	0.0078	16.9	3.0	1	23	1272	1294	1272	1294	0.99
16	17	0.00015	0.0088	16.7	0.1	1	23	1300	1322	1300	1322	0.97
17	17	0.00011	0.0063	17.2	0.6	3	23	1330	1351	1328	1351	0.95

Sequence Information

Coding Sequence: ATGGACAATATTCAGCCACCATTATACCTGTACCTGAAGAACACGGCTGGAGAAGATGTTGCACTAGAAATAAGACCAGAAGACGATTTCCAGACATTCCTAGATAAAGCCAAATCCTTATTAGGTTTCGACATAGACATAAACTCAATAACTAGAAATCAACCGGTTTCATTACAAGACAATGTTTATGAATTCCTTGAAAATGAACAAAATTCAGCTGTTGACTTACAACCAATGATCAATCCATTGTTGGAACCTACCAACGATGACAGGGGCTTAGTGTACGTTTTAGATGACGGAACACAAATAAATGCGTCACAGATACACTTCGATAATGATGAACCTCCAATGGATTTAACACTCGAGAAATTGCCCTTTGTAAAATATACAGACTCTATCGACGAATACTCCGAACCGGAATACACAGATGTCCGCAAAATAAATATATTAGAAAGTCCAGTTTCGCATTGGCCTAATGATAGTTCAAGTTCCAAGTGTGATTTCGGTAACACGTTACCATTTAAAATTGTATGCAATAACACAAGCGGGTTTGAAGCGCAATTCGCTAAATATTTGGAAGAAAGTACAAAACCATCAGCAGTTGTAACACCTACTGTAACAGAAGATATAACTCAATACGACGACGAGAAGAAGGAAAGAGATTTCAGTGCATTTACTAGAGAGGAAGTTATTAATATGTTTAAGGACTCGCCAGTGAATTCACTACCTTATGACAAGAGTAATTTCAATGAAAGAAAACACATCAGGAAAACTGACCCACTAAGGCCTATTCCTAAGAGTTGGACTCCGAAACCTATAACGTACTTAGATGTAGACGGCACACTGATAGGTCAAAATGAATGTCAAGATTGTTATATTTGTGGCAGATTTATAGAGAACAGCTTGGAGAAGTTGTATTTGTTTGATAACGAAGATCAGAGACTGCACCGTTCGTCGTCACAAAAGAAGTTGTATACGCAACTGAAGATTCTTTGCCAGAAATGTTTGGATGAGAATTTCAAACCGTGTTTCTCCAAGAATCCGAACCAACCGCTAAACTCCGACGAGTTTTTGATAATCAAGAACAATCAGCAGTATATTTATCAAGTGATCGGCGATATTAAAGGTCTCGGTCTAGCAAAATCCGAGCAAACGATTGACGAAGAAATATTCAAGGCGATGGATTTTTCAACACTCAAAATCGGTCCTAAGTGTGAAATCATTACCGGCTCCATGGACAATGATGAAGATCAAAATTCGGATGATGTAGTCATTGTCAAAGACGAGGGTTCGAGCGATGTAGAGATTATTGAAGAGCCGGAAATTGATGATATAGAGAATTTAGAAGAAGTTGATGAAGATGTCAAGGAGTTTCTAGGAAAATGCGAGCTTGATGATAACGAAGAATCAAAGGAAATGAAATGCAGGTTTTGCGAGCGTGCGTTTATAAGTCTAGAAGAAGTAATCGAACACGGTAACGAGCACAAGCACGAAACGGACGACGGAGAGGTTTATGCGTGTCCGCTTTGCAATTATGGTTATGCGAACTTCAAATGGTTGAGGGGACATTTGAGAGCAGCTCACGATGCTACGAAAGAAATAAAGCAAGAAGAAAACACCAAAAATGAGGAAGAAACGAAAGAAAATAATATAAAAAACAAGGAAACAAAGTCGCCAGTCTCAAGGGAGTGTTGTTCGCCAATCGCCAAAAGAACAAGAAGTGCTAATAAGAATAAAAATATTGTTGTCCAGAAAGAAGTTCCAGAGAAAAATGATCCGCCCGAAGGAGAGTCGACACAAGAGCTAGACAACACTAAAGAAGCGGTGGAACCTTGCGCGATGAAGGTAGAAGTGAAGCAAGAAGCTTTGGATTCTAGTGACGAAGAATCCATTTGGATCGTCCATACGGCGGACGAGGGTGGGGCCGCGCAGCTTGAGAAATTTTTCTGTAAAAAGGAACCAAAAAAAACTCAGAACAACGGATTCAAGAGGATGATTCGATGTCCAACATGCAATGAAATCTACTGCGAGACAGACCCGCCTCACACGTGCAGTCGTCGCGGGAGGAAACGCAAAGTGGCCAGCGAATGTTCTGAAATATTTGTGCCCACCGAGGAGGATTTCATCAAGAGAGCTCAAGGTCGTCCAAGGCGCGTGGACGAATGTAACAGTATCTCGGTCCCGAGAGTTCAGAAAAGGAAGAATAAGGAGCCAACATCGGATCCGCAAGTCGTCACCTGTCACAACTGCGACATGTCGTTCACATCTAAAATCCGTCTCAAGTTTCACATGCAGTTCCACGATCCGACGGCCATGTTGACGGAAGAGGGCGCTTACGCGTGCACCGAATGCAAAGACGCCACCTACGCCACGGAGACGGAACTGTTCGACCACATACACTTTCAGCACAGCAAGCAGCGCCGGTGGCAATGTCCGGTCGAGGATTGCAAGAAGATGTTCTATTTGAGAGCGACTCTGACGAAACACAGTCGCACGCACACGGACACGCGGCGCTACGTGTGCGTCACTTGCGGCAAACGGTTCTTGGACAAGCAGACCCTGGACGAGCACGGGGTCACTCACTTACAGATAAAGCCGTTCCAATGTCACGTATGCATGAAACAACTGACGAGACGCTCTCGTCTGAGGATGCACCTTCGGGCTCATGAGGAGGAACTGTCTCCGACCCTCGTGCTGGTCTGCGCAGTGTGCAGTAGAGCCTTCAGGGACCACCAAGACGCTCAGGAACACTCAACTAAATCGAGCGAGTGTATAGAAGTGTTTGCGAACGAACTGAAGGAGGAGGATGAAAGGCAGACGTCAGTCCAATTGTCGCCCACGAGCGGATTGGTCACGAGGAACGCCAAAGTTAAGGAGCCATCCATCTTCGCCAATCCGATTCCTCGTCAGGTGGCGGATCATATAGGTGAGAAGTTGATGTCCGAATTGGCCGATGAAGCGAAGAATATAATGAGAGTAGTGGAAATAGAGAAAGCCTTTCGATGCGAGTACTGCGAAGATGTATTCTATTCGGAGGGTGGCTTGAACAAGCATAGGATTATACACAAGGGAGTGAAAAATCCATTTGTATGTCACGTCTGCAAAGTTAGCTTCGCAACATACTCCAGGTGCACTACGCACAAAACAACGCACGGCTTCTACAAGCGTTCAATGGCTGATGTAAAGTCAAAAGAAGCAAATCAGTCTGCCTCGTCTACTGGTATAGTCGGTTATGGGGGGTTTCCTGTGGTCAAGCACTTCCTTTGCGAGGATTGTGGTCGTTCGTATTTACATTGGACCTATTTACAAGTTCACAGAAGAATGAAACACGCTAACGAGAATATTTTGTATAAATGTAACGAGTGCGATGTAACGTTTCCGAACAGTTGGAGTATAGCGTATCATAAAAAGAAAGTTCACAGTAACGTTACAGATGGCGTCGTCGGCACTACAAAAACACCAACAAATTTTTACAGGATACAATGTCGTGATTGCGACGAAGTGTTGCCGAATAAAATTGCACTCTACCAACATAGAAAGAAGGAGCATACTGACTTGTCACTCGCATTTGATTGTGCGCAGGACGATACGTGGTCAGACAATGCACAACAAGCGTGTACATCCATATCTTATTCCCCTTCAACGAAGACAATATGTGGTAAATGCGGCAAGAATTTTGAAAATGTCAACACATTGAAGATTCATTACATGGAAGTTCACGGCAACGAATTGCAAACGTGCACAATATGCTGCAAGTGGTTCCCGAGCCGCGTGGAGCTGCAGTGTCACGTGCGAACGCACGCGTTGCGTCCGTACACGTGCTCGCAGTGCGGCCACTCGTTCCGCACGGCGTCCATGCGCAGCGAGCACCTGCGGACGCACACGGGCGAGCGTCCGTTTCCGTGCGACGTGTGCGGCGTCGCCTTTAGACGTTCAACGGCGATGCGTAATCATCGATTGATCCACACTGGTGTCCGACCTTGGGCGTGCCCTCGATGCCCCAAGAAGTTCCGCATAAGGTCTGATTTGCGAACCCACCTCAGGCTGAAGCATCCTGCCTATTTGGCCGTCATTGAGATGCCAAATGTAAATCCAAACGAGGAAGAGATAATCCAACAGCTCCATTCGAATAATATTGCGTTGCAGAAAGTCATTTCAATCAGCAAAATATCGTTTCAACAAGATTCCGATAGTATAGTACCGAACTCGGCCCGGGCTTTGTCTTTGGTAGGCGTCTCTCGCACACCAATAATACTCAGAAGCAGGCCCCTAGAGAAAATTGAAGAGTTTCAAGCGGTACGTCGAGGCCGAGGCATAGCTAAGAACCCGCGGAGGCCTAAAATGTTGCAACAATCGGTCACAGAATCGCAACAAGACAATGTCTACGCAATTGATGATGTCGCCAAGGAGGAAACCGACAACAGTTTGGATGTATTTTTGAAATGGCCCAATTTCAATCAGACAAACAAAGATTTGCAATCTTAA
Protein Sequence: MDNIQPPLYLYLKNTAGEDVALEIRPEDDFQTFLDKAKSLLGFDIDINSITRNQPVSLQDNVYEFLENEQNSAVDLQPMINPLLEPTNDDRGLVYVLDDGTQINASQIHFDNDEPPMDLTLEKLPFVKYTDSIDEYSEPEYTDVRKINILESPVSHWPNDSSSSKCDFGNTLPFKIVCNNTSGFEAQFAKYLEESTKPSAVVTPTVTEDITQYDDEKKERDFSAFTREEVINMFKDSPVNSLPYDKSNFNERKHIRKTDPLRPIPKSWTPKPITYLDVDGTLIGQNECQDCYICGRFIENSLEKLYLFDNEDQRLHRSSSQKKLYTQLKILCQKCLDENFKPCFSKNPNQPLNSDEFLIIKNNQQYIYQVIGDIKGLGLAKSEQTIDEEIFKAMDFSTLKIGPKCEIITGSMDNDEDQNSDDVVIVKDEGSSDVEIIEEPEIDDIENLEEVDEDVKEFLGKCELDDNEESKEMKCRFCERAFISLEEVIEHGNEHKHETDDGEVYACPLCNYGYANFKWLRGHLRAAHDATKEIKQEENTKNEEETKENNIKNKETKSPVSRECCSPIAKRTRSANKNKNIVVQKEVPEKNDPPEGESTQELDNTKEAVEPCAMKVEVKQEALDSSDEESIWIVHTADEGGAAQLEKFFCKKEPKKTQNNGFKRMIRCPTCNEIYCETDPPHTCSRRGRKRKVASECSEIFVPTEEDFIKRAQGRPRRVDECNSISVPRVQKRKNKEPTSDPQVVTCHNCDMSFTSKIRLKFHMQFHDPTAMLTEEGAYACTECKDATYATETELFDHIHFQHSKQRRWQCPVEDCKKMFYLRATLTKHSRTHTDTRRYVCVTCGKRFLDKQTLDEHGVTHLQIKPFQCHVCMKQLTRRSRLRMHLRAHEEELSPTLVLVCAVCSRAFRDHQDAQEHSTKSSECIEVFANELKEEDERQTSVQLSPTSGLVTRNAKVKEPSIFANPIPRQVADHIGEKLMSELADEAKNIMRVVEIEKAFRCEYCEDVFYSEGGLNKHRIIHKGVKNPFVCHVCKVSFATYSRCTTHKTTHGFYKRSMADVKSKEANQSASSTGIVGYGGFPVVKHFLCEDCGRSYLHWTYLQVHRRMKHANENILYKCNECDVTFPNSWSIAYHKKKVHSNVTDGVVGTTKTPTNFYRIQCRDCDEVLPNKIALYQHRKKEHTDLSLAFDCAQDDTWSDNAQQACTSISYSPSTKTICGKCGKNFENVNTLKIHYMEVHGNELQTCTICCKWFPSRVELQCHVRTHALRPYTCSQCGHSFRTASMRSEHLRTHTGERPFPCDVCGVAFRRSTAMRNHRLIHTGVRPWACPRCPKKFRIRSDLRTHLRLKHPAYLAVIEMPNVNPNEEEIIQQLHSNNIALQKVISISKISFQQDSDSIVPNSARALSLVGVSRTPIILRSRPLEKIEEFQAVRRGRGIAKNPRRPKMLQQSVTESQQDNVYAIDDVAKEETDNSLDVFLKWPNFNQTNKDLQS

Similar Transcription Factors

Sequence clustering based on sequence similarity using MMseqs2

100% Identity: iTF_01386156; iTF_01387153; iTF_01387894;
90% Identity: iTF_01387153; iTF_01387894;
80% Identity: -