Basic Information

Insect: Synanthedon myopaeformis
Gene Symbol: -
Assembly: GCA_944738625.1
Location: CALYFO010000325.1:129752-152258[+]

Transcription Factor Domain

TF Family: zf-C2H2
Domain: zf-C2H2 domain
PFAM: PF00096
TF Group: Zinc-Coordinating Group
Description: The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
Hmmscan Out: # of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc

1 17 0.51 30 5.5 0.1 2 23 465 486 464 486 0.93

2 17 0.0055 0.32 11.7 0.1 1 23 496 519 496 519 0.96

3 17 0.081 4.7 8.1 4.1 2 23 748 769 747 769 0.95

4 17 1.2 70 4.4 0.8 1 23 781 805 781 805 0.91

5 17 0.00042 0.024 15.2 0.6 2 23 812 835 811 835 0.97

6 17 0.082 4.8 8.0 0.2 1 23 841 863 841 863 0.93

7 17 0.015 0.85 10.4 3.4 1 23 869 891 869 891 0.98

8 17 1.1 62 4.5 0.1 2 19 902 919 901 922 0.88

9 17 0.005 0.29 11.9 0.2 1 23 1002 1024 1002 1024 0.98

10 17 3.1 1.8e+02 3.1 6.3 1 23 1031 1053 1031 1053 0.95

11 17 0.0016 0.095 13.4 1.8 1 23 1089 1112 1089 1112 0.95

12 17 0.016 0.91 10.3 0.2 1 23 1119 1142 1119 1142 0.96

13 17 0.014 0.79 10.5 0.1 2 23 1162 1184 1161 1184 0.96

14 17 0.0017 0.098 13.4 0.5 2 23 1218 1240 1217 1240 0.95

15 17 0.00013 0.0074 16.9 3.0 1 23 1272 1294 1272 1294 0.99

16 17 0.00014 0.0083 16.7 0.1 1 23 1300 1322 1300 1322 0.97

17 17 6e-05 0.0035 17.9 0.4 3 23 1330 1351 1328 1351 0.95

#	of	c-Evalue	i-Evalue	score	bias	hmm coord from	hmm coord to	ali coord from	ali coord to	env coord from	env coord to	acc
1	17	0.51	30	5.5	0.1	2	23	465	486	464	486	0.93
2	17	0.0055	0.32	11.7	0.1	1	23	496	519	496	519	0.96
3	17	0.081	4.7	8.1	4.1	2	23	748	769	747	769	0.95
4	17	1.2	70	4.4	0.8	1	23	781	805	781	805	0.91
5	17	0.00042	0.024	15.2	0.6	2	23	812	835	811	835	0.97
6	17	0.082	4.8	8.0	0.2	1	23	841	863	841	863	0.93
7	17	0.015	0.85	10.4	3.4	1	23	869	891	869	891	0.98
8	17	1.1	62	4.5	0.1	2	19	902	919	901	922	0.88
9	17	0.005	0.29	11.9	0.2	1	23	1002	1024	1002	1024	0.98
10	17	3.1	1.8e+02	3.1	6.3	1	23	1031	1053	1031	1053	0.95
11	17	0.0016	0.095	13.4	1.8	1	23	1089	1112	1089	1112	0.95
12	17	0.016	0.91	10.3	0.2	1	23	1119	1142	1119	1142	0.96
13	17	0.014	0.79	10.5	0.1	2	23	1162	1184	1161	1184	0.96
14	17	0.0017	0.098	13.4	0.5	2	23	1218	1240	1217	1240	0.95
15	17	0.00013	0.0074	16.9	3.0	1	23	1272	1294	1272	1294	0.99
16	17	0.00014	0.0083	16.7	0.1	1	23	1300	1322	1300	1322	0.97
17	17	6e-05	0.0035	17.9	0.4	3	23	1330	1351	1328	1351	0.95

Sequence Information

Coding Sequence: ATGGACAATAATCAGCCACCGTTATTACTGTACCTAAAGAACACGGCTGGAGAAGATGTTGCACTAGAGATAACTCGAGAAGACGATTTCCAGACCTTCCTAGATAAAGCCAAATCATTATTGGGTTTCGACATAGACATAAACTCAATAACTAGAAATCAACCGGTTTCATTACAAGACAATGTTTATGAATTCCTTGAAAATGAACAAAATTCAACTGTTGGTCTACAACCAATAATCGATCCATTCTTGGAACCTACCAATGAAGATACGGGTTTAGTGTACGTTTTAGATGACGGAACACAAATAAATGCGTCACAAATACATTTCGATAATGACGAACCTCCAATGGACTTAACACTCGAGAAATTGCCGTTTGTCAAATATTCAGACGCAATCGACGAAGACTCCGAACCGGAATACACTGATGTCCGCAAAATAAATATAGTAGAAAGTCCAGTTTCGCATTGGCATAGTGACAGTTCAAGTTCTAAATGCGATTTCGGTGATACGCTACCATTTAAAATTGTATGCAATAACACAAGCGGGATTGAAGCACAATTCGCTAAATATTTAGAAGAAGCTACAAAACCATTAGCAGTGCAAACAGCTGTAACAGAAGATCTCACTCAATACGATGATGAGAAGAAGGAAAGAGATTTCAGTGCATTTACTAGAGAGGAAGTTATTAATATGTTTAAGGACTCACCTGTGAATTCACTTCCTTATGACAAGAGTAATTTCAATGAGAGAAAACATATTAGGAAAACTGATCCATTAAGGCCGATTCCTAAGAATTGGACTCCAAAACCTATAACGTACTTAGATGTAGATGGCACATTGATTGGTCAAAATGAATGTCAAGATTGTTATATTTGTGGCAGATTTATAGAGAACAGCTTAGAGAAGTTGTATTTGTTTGACAACGAAGATCAGAGATTGCATCGTTCGTCGTCACAAAAGAAATTGTACACTCAACTGAAGATTCTTTGCCAGAAATGTTTGGATGAGAATTTCAGACCGTGTTTCTCCAAGAATCCGAACCAACCGCTAAATTCCGATGAGTATTTAATAATCAAGAACAATCAGCAGTATATTTATCAAGTGATTGGCGATATTAAAGGTCTCGGTCTAGCAAAATCTGAGCAAAAGGTTGACGACGAAATATTTAAGGCGATGGAATTTTCAAAACTCAAAATCACTGGTTCCTTGGACAATGACGATCAAAATTCTGATGATGTAGTCATTGTAAAAGACGAGGGTTCGAGCGATGTTGAAATTATTGAAGAGCCGGAAATTGATGACATCGAGAATTTAGAAGAAGCTGATGAAGAAGTCAAGGAGTTTTTAGGAAAATGTGAGCGTGATGATAACGGGGCATCGAAGGAAATGAAATGCAGGTTTTGCGAGCGTGCGTTTGTAAATCTAGAAGAAATAATCGAACACGGTAACGAACACAAACACGAAACAGACGATGGAGAGGTTTATCCGTGTCCGCTTTGCAATTACGGTTATGCCAACTTCAAATGGTTGAGGGGACATTTGAGAGCAGCTCACGATGCTACGAAAGAAAATATAAAGCAAGAAGAAAACACTAAGAGTGTTGAAGAAACGAAAGAAAATATAAAAAACAAGGAAACAAAGTCGCCAGTCTCAAAGGAGTGTTGTTCGCCTATCGCTAAAAGAACAAGAAGTGCTAATAAGAATAAAAATACTATTGGCCAGAAAGAAGAAGGTACGAAGGAAAGTCGGCAGAATGATGACGCTCCACTCGAAGGGAAAAATGATCCGCCTGAAGGAGAGTCGAGACAAGAGCTAGACATTAAAGAAGAGGTGGAACCTTGTGTAATGAAAGCAGAAGTGAAACAAGAAGCTTTGGATTCTAGTGACGAAGAATCCATTTGGATCGTTCATACAGCAGACGAGGGTGGGGCCGCACAGCTTGAGAAAATTTTCTCTAAAAAGGAACCAAGAAAAATTCAGAATAATGGATTCAAGAGGATGATTCGATGTCAAACGTGCAATGAAATATACTGCGAGACAGACCCGACTCACACGTGTAGTCGTCGCGGGAGAAAACGCAAAGTGGTCAGCGACTGTTCTGAAATATTTGTGCCTACTGAGGAGGATTTTATCAAGAGAGCTCAAGGTCGACCTAGGCGCAAAGAATGTGACAGTCTCTTAGTCCCGAAAATTAATAAAAGGAAGAATAAGGAGCCAACATCGGATCCGCAAGTCGTCACATGTCACAACTGCAACATGTCGTTCACATCTAAAGTCCGTCTCAAGTTTCACATGCAGTTCCACGATCCGACGGCCATGTTGACGGAGGAAGGCGCATACGCATGCACCGAATGCAAAGACGCCACTTTCGCCACGGAGACGGAGCTGTTCGACCACATACACTTTCAGCACAGCAAGCAGCGCAGGTGGCAATGTCCGGTCGAGGATTGCAAGAAGATGTTCTATTTGAGAGCGACTCTGACGAAACACAGTCGCACGCACACGGACACGCGCCGCTACGTGTGCGTCACTTGCGGCAAACGGTTCTTGGACAAGCAGACCCTGGACGAGCACGGGGTCACCCATTTACAGATAAAGCCGTTCCAATGTCACATATGTATGAAACAATTGACCAGACGCTCTCGTCTGAGGATGCACCTTCGCGCTCACGAGGAGGAACTGTCTCCAACCCTCGTGCTGGTCTGCGCCGTGTGCAGTAGAGCCTTCAGGGACCATCAAGACGCTCAGGAACACGCAACGAAATCGAGCGAATGTATTGAAGTATTTGCGAACGAATTGAAGGAAGAAGAAGAAAGCCAGACGTCTGTCCAATTGTCCCCTACGAGCGGATTGGTCACGAGTAACGCCAATGTTAAGGAGCCATCCCGCTTCACCAACCCGATTCCTCGTCAGGTAGCTGATCAGATTGGTGAGAAGTTGCTGTCCCAGTTGCCTGATGAAGCGAAGAATATAATGAGAGTAGTGGAAATTGAGAAAGCCTTTCGATGCGAGTACTGCGAAGATGTATTCTATTCGGAGGGTGGCTTGAACAAGCATCGGATTATACACAAGGGCGTGAAAAACCCATTCGTATGTCACGTCTGCAAAGTTAGCTTCGCAACATACTCCAGGTGCACTACACACAAAACAACGCACGGCTTCTACAAGCGTTCAATGGCTGATGTAAAGACAAAAGAAGCAAATCAATCTGCCTCGTCTACTGGTATAGTCGGTTATGGGGGGTTTCCGGTGGTCAAGCATTTTCTTTGCGAGGATTGTGGTCGTTCGTATTTGCATTGGACCTATTTACAAGTTCACAGAAGAATGAAACACGCGAACGAGAATTTATTGTACATATGTAATGAGTGCGATGTAAAGTTTCCGAACAGTTGGAGTATAGCGTATCATAAAAAGAAAGTTCACAGTAACGTTACAGATGGCGTCGCCATCACAAAAACACCAATTAATTTTTACAGGATACAATGTCGTGATTGCGACGAAGTGTTGCCGAATAAAATTGCACTCTACCAACATAGAAAGAAGGAGCATAGTGACTTGTCACTCGCATTTGATTGTACACAGGACGATACGTGGTCAGACAATGCTCAACAAGCGAGCACATCCATAGTTTATTCTCCTTCAACGAAGACATGTGGTAAATGCGGCAAAAATTTTGAAGATGTCAACACATTAAAGATTCATTACAAGGAAGTTCACGGCAACGAATTGCAGACGTGCACAATATGCTGCAAGTGGTTCCCGAGCCGCGAGGAGTTGCAGTGTCACGTGCGAACGCACGCGTTGCGTCCGTACACTTGCTCGCAGTGCGGTCACTCGTTCCGCACGGCGTCCATGCGCAGCGAGCACTTGCGGACGCACACGGGCGAGCGTCCGTTCCCGTGCGACGTGTGCGGCGTCGCCTTTAGACGATCAACAGCGATGCGAAATCACCGATTGATCCACACCGGTGTCCGGCCTTGGGCGTGCCCTCTATGCCCCAAGAAGTTCCGCATAAGGTCGGATTTGCGAACACATCTCAGGCTCAAGCATCCGGCCTATTTGGCCGTCATTGAGATGCCAACTGAAAATCCAAACGAGGAAGAAATAATCGAACAGCTCCACTCGAATAATATTGGATTGCAGAAAGTCATTTCAATCAGCAAAATATCGTTTGAACAAGGTTCGGATAGTATAGTACCGAATTCGGCCCGGGCTTTGTCGTTGGTTGACGTTTCGCGCACACCAATAATACTCAGAGGCAGGCCCCTAGAGAAGATTGATGAGTTTCAAACAGTACGTCGAGGCCGAGGCATAGCTAAGAATCCGCGGAGGCCTAAAATGTTGCAACAATCTGTCACCGAATCTCAACAAGACAATGTTTACCCAATTGATGATGTCGCTAAGCAGGAAACCGACAATAGTTTGGATGTGTTTCTGAAATGGCCCAATTTTAATGAGACAAACAAAGATTTACAATCTTAA
Protein Sequence: MDNNQPPLLLYLKNTAGEDVALEITREDDFQTFLDKAKSLLGFDIDINSITRNQPVSLQDNVYEFLENEQNSTVGLQPIIDPFLEPTNEDTGLVYVLDDGTQINASQIHFDNDEPPMDLTLEKLPFVKYSDAIDEDSEPEYTDVRKINIVESPVSHWHSDSSSSKCDFGDTLPFKIVCNNTSGIEAQFAKYLEEATKPLAVQTAVTEDLTQYDDEKKERDFSAFTREEVINMFKDSPVNSLPYDKSNFNERKHIRKTDPLRPIPKNWTPKPITYLDVDGTLIGQNECQDCYICGRFIENSLEKLYLFDNEDQRLHRSSSQKKLYTQLKILCQKCLDENFRPCFSKNPNQPLNSDEYLIIKNNQQYIYQVIGDIKGLGLAKSEQKVDDEIFKAMEFSKLKITGSLDNDDQNSDDVVIVKDEGSSDVEIIEEPEIDDIENLEEADEEVKEFLGKCERDDNGASKEMKCRFCERAFVNLEEIIEHGNEHKHETDDGEVYPCPLCNYGYANFKWLRGHLRAAHDATKENIKQEENTKSVEETKENIKNKETKSPVSKECCSPIAKRTRSANKNKNTIGQKEEGTKESRQNDDAPLEGKNDPPEGESRQELDIKEEVEPCVMKAEVKQEALDSSDEESIWIVHTADEGGAAQLEKIFSKKEPRKIQNNGFKRMIRCQTCNEIYCETDPTHTCSRRGRKRKVVSDCSEIFVPTEEDFIKRAQGRPRRKECDSLLVPKINKRKNKEPTSDPQVVTCHNCNMSFTSKVRLKFHMQFHDPTAMLTEEGAYACTECKDATFATETELFDHIHFQHSKQRRWQCPVEDCKKMFYLRATLTKHSRTHTDTRRYVCVTCGKRFLDKQTLDEHGVTHLQIKPFQCHICMKQLTRRSRLRMHLRAHEEELSPTLVLVCAVCSRAFRDHQDAQEHATKSSECIEVFANELKEEEESQTSVQLSPTSGLVTSNANVKEPSRFTNPIPRQVADQIGEKLLSQLPDEAKNIMRVVEIEKAFRCEYCEDVFYSEGGLNKHRIIHKGVKNPFVCHVCKVSFATYSRCTTHKTTHGFYKRSMADVKTKEANQSASSTGIVGYGGFPVVKHFLCEDCGRSYLHWTYLQVHRRMKHANENLLYICNECDVKFPNSWSIAYHKKKVHSNVTDGVAITKTPINFYRIQCRDCDEVLPNKIALYQHRKKEHSDLSLAFDCTQDDTWSDNAQQASTSIVYSPSTKTCGKCGKNFEDVNTLKIHYKEVHGNELQTCTICCKWFPSREELQCHVRTHALRPYTCSQCGHSFRTASMRSEHLRTHTGERPFPCDVCGVAFRRSTAMRNHRLIHTGVRPWACPLCPKKFRIRSDLRTHLRLKHPAYLAVIEMPTENPNEEEIIEQLHSNNIGLQKVISISKISFEQGSDSIVPNSARALSLVDVSRTPIILRGRPLEKIDEFQTVRRGRGIAKNPRRPKMLQQSVTESQQDNVYPIDDVAKQETDNSLDVFLKWPNFNETNKDLQS

Similar Transcription Factors

Sequence clustering based on sequence similarity using MMseqs2

100% Identity: iTF_01388850;
90% Identity: iTF_01388850;
80% Identity: -