Basic Information

Insect: Synanthedon formicaeformis
Gene Symbol: -
Assembly: GCA_945859765.1
Location: CAMAON010000094.1:50267-69193[+]

Transcription Factor Domain

TF Family: zf-C2H2
Domain: zf-C2H2 domain
PFAM: PF00096
TF Group: Zinc-Coordinating Group
Description: The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
Hmmscan Out: # of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc

1 13 0.24 14 6.7 0.1 2 23 472 493 471 493 0.94

2 13 0.0046 0.26 12.0 0.1 1 23 503 526 503 526 0.96

3 13 0.11 6.5 7.7 3.5 2 23 741 762 740 762 0.95

4 13 1 57 4.7 0.8 1 23 774 798 774 798 0.91

5 13 0.00035 0.02 15.6 0.6 2 23 805 828 804 828 0.97

6 13 0.069 3.9 8.4 0.2 1 23 834 856 834 856 0.93

7 13 0.012 0.69 10.7 3.4 1 23 862 884 862 884 0.98

8 13 0.89 51 4.8 0.1 2 19 895 912 894 915 0.88

9 13 0.0042 0.24 12.2 0.2 1 23 995 1017 995 1017 0.98

10 13 2.6 1.5e+02 3.4 6.3 1 23 1024 1046 1024 1046 0.95

11 13 0.0014 0.078 13.7 1.8 1 23 1082 1105 1082 1105 0.95

12 13 0.0016 0.094 13.5 0.3 1 23 1112 1135 1112 1135 0.97

13 13 0.011 0.65 10.8 0.1 2 23 1155 1177 1154 1177 0.96

#	of	c-Evalue	i-Evalue	score	bias	hmm coord from	hmm coord to	ali coord from	ali coord to	env coord from	env coord to	acc
1	13	0.24	14	6.7	0.1	2	23	472	493	471	493	0.94
2	13	0.0046	0.26	12.0	0.1	1	23	503	526	503	526	0.96
3	13	0.11	6.5	7.7	3.5	2	23	741	762	740	762	0.95
4	13	1	57	4.7	0.8	1	23	774	798	774	798	0.91
5	13	0.00035	0.02	15.6	0.6	2	23	805	828	804	828	0.97
6	13	0.069	3.9	8.4	0.2	1	23	834	856	834	856	0.93
7	13	0.012	0.69	10.7	3.4	1	23	862	884	862	884	0.98
8	13	0.89	51	4.8	0.1	2	19	895	912	894	915	0.88
9	13	0.0042	0.24	12.2	0.2	1	23	995	1017	995	1017	0.98
10	13	2.6	1.5e+02	3.4	6.3	1	23	1024	1046	1024	1046	0.95
11	13	0.0014	0.078	13.7	1.8	1	23	1082	1105	1082	1105	0.95
12	13	0.0016	0.094	13.5	0.3	1	23	1112	1135	1112	1135	0.97
13	13	0.011	0.65	10.8	0.1	2	23	1155	1177	1154	1177	0.96

Sequence Information

Coding Sequence: ATGGACAATATTCAGCCACCATTATACCTGTACCTGAAGAACACGGCTGGAGAAGATGTTGCACTAGAGATAAGACCAGAAGATGATTTCCAGACCTTCCTAGATAAAGCCAAATCCTTATTAGGTTTCGACATAGACATAAACTCAATAACTAGAAATCAACCGGTTTCATTACAAGACAATGTTTATGAATTCCTTGAAAATGAACAAAATTCAACTGTTGGCCTACAACCAATAATCGATCCATTGTTGGAGCTAACCAATGAAGACACGGGTTTAGTGTACGTTTTAGATGACGGAACACAAATAAATGCGTCACAGATACATTTCGACAATGACGAACCTCCAATGGATTTAACACTAGAGAAATTACCGTTTGTCAAATATTCAGACGCAATAGACGAAGACTCTGAACCGGAATACAAAGATGTCCGTAAAATAAATATAGTAGAAAGTCCAGTTTTGCAATGGCCTAGTGATAGTTCAAGTTCTAAATGTGATTTCGGTAACACGTTACCATTTAAAATTGTATGCAATAACACAAGCGGGTTCGAAGCGCAATTCGCTAAATATTTGGAAGAAGCTACAAAACCGTCGGCAGTGCAAACAGCTGTAACAGAAGATCTCACTCAATACGATGATGAGAAAACCGAAAGAGATTTCAGTGCTTTTACTAGAGAAGAAGTTATTAATATGTTTAAAGACTCCCCAGTGAATTCACTACCTTATGACAAGAGTAATTTCAATGAAAGAAAACATATTAGGAAAACTGATCCACTAAGGCCGATTCCAAAGAATTGGACTCCAAAACCTATAACGTACTTAGATGTAGATGGTACATTGATGGGTCAAAATGAATGTCAAGATTGTTATATTTGTGGCATATTTATAGAGAACAACTTGGAGAAGTTGTATTTGTTTGATAACGAGGATCAGAGATTGCATCGTTCGTCGTCACAAAAGAAGTTATATACACAACTAAAGATTCTTTGCCAGAAATGTTTAGATGAGAATTTCAAACCGTGTTTCTCCAAAAACCCGAACCAACCGCTAAACTCCGATGAGTTTTTGATAATCAAGAACAATCAGCAGTATATTTATCAAGTGATTGGCGATATTAAAAGTCTTGGTCTAGCAAAATATGAGCAAAAGGTTGACGACGAAATATTTAAAACGATGGAATTTTCAAATCTTAAAATCGGTCCAAAGTGTGAAATAATCACTGGCTCCTTGGACAATGACGATCAATATTCTGATGATGTAGTCATTGTCAAAGACGAGGGTTCGAGCGATGTGGAAATTATTGAGGAGGCGGAAATTGATGACATCGAGAATTTAGAAGAAGCTGATGAAGACGTCAAGGAGTTTTTAGGAAAATGCGAGCGTGATGATAACGGCGAACCGAAGGAAATGAAATGCAGGTTTTGCGAGCGTGCGTTTGTAAGTCTAGATGAAGTAATCGAACACGGTAACGAACACAAGCACGAAACAGACGATGGAGAGGTTTATCCGTGTCCTCTTTGCAATTATGGTTATGCGAACTTCAAATGGTTAAGGGGACATTTGAGAGCAGCTCACGATGCTACGAAAGAAATAAAGCAAGAAGAAAACACCAAAAACGAGGAAGAAACGAAAGAAAATATAAAAAACGAGGTAACAAAGTCGCCAGTCTCAAGGGAGTGTTGTTCGCCAATCGCTAAAAGAACAAGAAGTGCCAATAAGAATAAAAATATTGTTGGGCAGAAAGAAGAAGAAAAAAATGATCCGCCTGCAGGAGAGTCGAGACAAGAACTAGACAATAAAGAAGCGGTGGAACCTTGCGTAATGAAGACAGAAGTAAAAGTAGAAGCTTTAGATTCTAGTGACGAAGAATCCTTTTGGATCGTTCACACGGCAGACGAAGGTGGGGCAGCACAGCTTGAGAAAATTTTCAGTAAAAAGGAACCAAGAAAAACTCAGAACAATGGATTCAAGAGGATGATTCGATGTCCAACGTGCAATGACATCTACTGCGAGACAGATCCGCCACACACGTGTAGTCGTCGCGGGAGAAAACGCAAAGTGGTCAGCGACTGTTCTGAAATATTTGTGCCCACTGAGGAGGATTTCATCAAGAGAGCTCAAGGTCGACCCAGGCGCGTAGACGAATGTGACAGTCTCTTAATCCCGAGAGTTCAGAAAAGGAAGAATAAGGAGCCAACATCGGATCCGCAAGTCGTCACCTGTCATAATTGCGAAATGTCGTTCACGTCTAAAGTCCGTCTCAAGTTCCACATGCAGTTTCACGATCCGACATCCATGTTGACGGAGGACGGCGCATACGCGTGCACCGAATGCAAAGACGCCACTTTCGCCACTGAGACGGAACTGTTCGACCACATACACTTTCAGCACAGCAAGCAGCGCAGGTGGCAATGTCCGGTCGAGGATTGCAAGAAGATGTTCTATTTGAGAGCGACTCTGACGAAACACAGTCGCACGCACACGGACACGCGCCGCTACGTGTGCGTCACTTGCGGCAAACGGTTCTTGGACAAGCAGACCCTGGACGAGCACGGGGTCACCCATTTACAGATAAAGCCGTTCCAATGTCACATATGCATGAAACAACTGACGAGACGCTCTCGTCTGAGGATGCACCTTCGGGCTCACGAGGAGGAACTGTCTCCGACCCTCGTGCTGGTCTGCGCCGTGTGCAGTAGAGCCTTCAGGGACCACCAAGACGCTCAGGAACACGCAACGAAATCGAGCGAGTGTATAGAAGTGTTTGCGAACGAACTGAAGGAAGAAGAAGAAAACCAGACGTCAGTCCAATTGTCGCCTACGAGCGGATTGGTCACGAGTAACGCCAAAGTTAAGGAGCCATCCCTCTTCACCAATCCGATTCCTCGCCAGGTGGCGGATCATATAGGTGACAAATTGATGTCCGAATTGTCTGATGAAGCGAAGAATATCATGAGAGTAGTGGAAATAGAGAAAGCCTTTCGATGCGAGTACTGCGAAGACGTATTCTATTCGGAGGGTGGCTTGAACAAGCATCGAATTATACACAAGGGCGTGAAGAACCCATTCGTATGTCACGTTTGCAAAGTTAGCTTCGCAACATACTCCAGGTGCACTACACACAAAACAACGCACGGCTTCTACAAGCGTTCAATGGCTGATGTAAAGACAAAAGAGTCAAATCAGTCTGCCTCGTCTACTGGTATAGTCGGTTATGGGGGGTTTCCGGTGGTCAAGCATTTTCTTTGCGAGGATTGTGGTCGTTCATATTTGCATTGGACCTATTTACAAGTTCACAGAAGAATGAAACACGCGAACGAGAATCTATTGTACAAGTGTAACGAGTGCGATGTAACGTTTCCGAACAGTTGGAGTATAGCGTATCATAAAAAGAAAGCTCACAGTAACGTTACAGATGGCGTGGGTACTACAAAAACATCAATGAATTTTTACAGGATACAATGTCGTGATTGCGACGAAGTGTTGCCGAATAAAATTGCACTCTACCAACATAGAAAGAAGGAGCATAGTGACTTGTCACTCGCATTTGATTGTACGCAGGGTAAGGATAAACAAAATATGACGTGTAGCTTAGGAACGGTGACAGTAGGTAGCCTTTCACGAAGACGAAACGAGTAG
Protein Sequence: MDNIQPPLYLYLKNTAGEDVALEIRPEDDFQTFLDKAKSLLGFDIDINSITRNQPVSLQDNVYEFLENEQNSTVGLQPIIDPLLELTNEDTGLVYVLDDGTQINASQIHFDNDEPPMDLTLEKLPFVKYSDAIDEDSEPEYKDVRKINIVESPVLQWPSDSSSSKCDFGNTLPFKIVCNNTSGFEAQFAKYLEEATKPSAVQTAVTEDLTQYDDEKTERDFSAFTREEVINMFKDSPVNSLPYDKSNFNERKHIRKTDPLRPIPKNWTPKPITYLDVDGTLMGQNECQDCYICGIFIENNLEKLYLFDNEDQRLHRSSSQKKLYTQLKILCQKCLDENFKPCFSKNPNQPLNSDEFLIIKNNQQYIYQVIGDIKSLGLAKYEQKVDDEIFKTMEFSNLKIGPKCEIITGSLDNDDQYSDDVVIVKDEGSSDVEIIEEAEIDDIENLEEADEDVKEFLGKCERDDNGEPKEMKCRFCERAFVSLDEVIEHGNEHKHETDDGEVYPCPLCNYGYANFKWLRGHLRAAHDATKEIKQEENTKNEEETKENIKNEVTKSPVSRECCSPIAKRTRSANKNKNIVGQKEEEKNDPPAGESRQELDNKEAVEPCVMKTEVKVEALDSSDEESFWIVHTADEGGAAQLEKIFSKKEPRKTQNNGFKRMIRCPTCNDIYCETDPPHTCSRRGRKRKVVSDCSEIFVPTEEDFIKRAQGRPRRVDECDSLLIPRVQKRKNKEPTSDPQVVTCHNCEMSFTSKVRLKFHMQFHDPTSMLTEDGAYACTECKDATFATETELFDHIHFQHSKQRRWQCPVEDCKKMFYLRATLTKHSRTHTDTRRYVCVTCGKRFLDKQTLDEHGVTHLQIKPFQCHICMKQLTRRSRLRMHLRAHEEELSPTLVLVCAVCSRAFRDHQDAQEHATKSSECIEVFANELKEEEENQTSVQLSPTSGLVTSNAKVKEPSLFTNPIPRQVADHIGDKLMSELSDEAKNIMRVVEIEKAFRCEYCEDVFYSEGGLNKHRIIHKGVKNPFVCHVCKVSFATYSRCTTHKTTHGFYKRSMADVKTKESNQSASSTGIVGYGGFPVVKHFLCEDCGRSYLHWTYLQVHRRMKHANENLLYKCNECDVTFPNSWSIAYHKKKAHSNVTDGVGTTKTSMNFYRIQCRDCDEVLPNKIALYQHRKKEHSDLSLAFDCTQGKDKQNMTCSLGTVTVGSLSRRRNE

Similar Transcription Factors

Sequence clustering based on sequence similarity using MMseqs2

100% Identity: iTF_01388850;
90% Identity: iTF_01388850;
80% Identity: -