Sagr001083.1
Basic Information
- Insect
- Sycophaga agraensis
- Gene Symbol
- -
- Assembly
- GCA_018906755.1
- Location
- JACCIE010000007.1:3852679-3866535[-]
Transcription Factor Domain
- TF Family
- zf-C2H2
- Domain
- zf-C2H2 domain
- PFAM
- PF00096
- TF Group
- Zinc-Coordinating Group
- Description
- The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
- Hmmscan Out
-
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc 1 30 1.4e-05 0.0018 19.0 0.9 1 23 218 240 218 240 0.98 2 30 0.0023 0.3 12.0 1.9 1 23 263 286 263 286 0.96 3 30 7.2e-05 0.0092 16.8 0.8 2 23 293 315 292 315 0.96 4 30 0.00063 0.081 13.8 0.9 1 21 335 355 335 356 0.94 5 30 0.0035 0.45 11.5 0.0 2 23 467 488 466 488 0.96 6 30 0.014 1.7 9.6 0.2 2 23 495 517 494 517 0.90 7 30 0.0001 0.013 16.3 0.1 1 23 585 608 585 608 0.96 8 30 0.0069 0.88 10.5 0.4 1 23 614 637 614 637 0.96 9 30 0.1 13 6.8 1.5 1 23 650 672 650 672 0.97 10 30 3.1e-05 0.0039 17.9 0.9 3 23 716 737 715 737 0.96 11 30 0.0083 1.1 10.3 0.8 2 23 799 822 798 822 0.93 12 30 2.7 3.4e+02 2.4 0.0 2 23 831 853 831 853 0.84 13 30 0.063 8.1 7.5 0.1 2 23 860 882 859 882 0.93 14 30 1.1e-05 0.0014 19.3 1.2 1 23 890 912 890 912 0.98 15 30 0.00018 0.023 15.5 3.3 1 23 989 1012 989 1012 0.97 16 30 0.014 1.8 9.5 0.5 2 23 1019 1041 1018 1041 0.95 17 30 0.00061 0.078 13.8 4.8 1 21 1076 1096 1076 1097 0.94 18 30 0.0023 0.3 12.0 1.8 2 23 1111 1132 1110 1133 0.93 19 30 0.75 96 4.1 3.1 1 23 1136 1158 1136 1159 0.95 20 30 0.0079 1 10.4 0.9 2 23 1166 1189 1165 1189 0.93 21 30 0.83 1.1e+02 4.0 0.2 2 23 1197 1219 1197 1219 0.95 22 30 3.1 4e+02 2.2 0.0 2 23 1226 1248 1225 1248 0.87 23 30 0.19 25 6.0 2.7 2 23 1257 1279 1257 1279 0.96 24 30 0.23 29 5.8 0.8 2 23 1285 1307 1285 1307 0.93 25 30 0.047 6 7.9 0.4 1 23 1374 1397 1374 1397 0.96 26 30 0.026 3.4 8.7 2.0 1 20 1426 1445 1426 1447 0.91 27 30 0.28 35 5.5 1.9 2 23 1536 1558 1535 1558 0.94 28 30 0.58 75 4.5 0.4 2 23 1565 1587 1564 1587 0.95 29 30 0.26 33 5.6 1.8 1 23 1598 1620 1598 1620 0.97 30 30 0.0063 0.8 10.7 0.4 1 19 1627 1645 1627 1646 0.95
Sequence Information
- Coding Sequence
- ATGGAGAACCGCGAGAGGTACGACGAGCTCTGCAGGCTCTGCGCCTCCTACGACAAAGTCAAGATGGACCTCTTCGGGAAGGACGGCAAGAACCGACAGCTCGTCGACAAGATCCACACCTGCCTGCCCTTCAAGATAACCGAAGATGATCGTCTGCCAAAATGCCTTTGCTACAGGTGCATGTACAATCTGGAGAACTTCTATGACTTCAGAACGGCCTGCGTCAATGCGGTCGCCCTCCTCGAGAGATGCCTGCCCGAAGAGCCCAAGATGCAGATTAAGCAGGAGGGGGAGGACGCCGAGCCCTATTCGGAGCTGCGCATGGAGCTGCTCAAGGAGAAGGAGAGCATGCCGATGCTCATCCCCGAGGCGCCGGTCGTCAACCCGAACGCGGCCCTCGGCACGCCGCCCAGGCTCAAGTCCGACGGCGAGCACGACCCCGACATGGACGACCTGGCCCACGACCACGGGGACATCGACGACAGACTCGACGAGCACGACGACGGGCACAAGTCGGACGAGTACGAGATGGACATGGAGACGAACCCCAGCGACTTCCTCGAGATGAGCGCGATGGTCCCCGAGGAGGAGCACCTGCTGCCCCACCCGGACTCGGGCGTCTTCCAGCACAGGAACGAGCAGCACGAGGTCTACGTCTGCTCCCTATGCAGCAAGGCCTTCAGCTCCAAGGGCCACCTCTCGCTGCACGCGCGCATCCACGTCGGCGCCGGGGACGTCATCGGCGAGAAGGTCATCACCGACGACCACACCTCCTACAAGAGGCCCTACCAGTGCGACCTCTGCAACAAGTCCTACTCGACGGCCAAGCACCGATGGGGACACGTCTCCACGACGCACAGAGGCCACCCGGCGGTCACCTGCAGCTACTGCTCGCGCATCTACTCGACGCGCACGAACCTCGAGGAGCACATCAAGTCGCGGCACGCGGGCCTACCGCCGCCGCCCGAGGTCCCCATGTCCTACGTCCAGCCGGACTCGCGGCACCAGTGCAAGACCTGCCCCAAGATGTACACCAACATCACCGATCTCAACAAGCACAGCAGAGTCTGCCTCGGTGAGCAGCACCGCAAGGACCACTCCAACAACACTTTCAACCCCCAGAACTTCGGTAAGAGAACTCCCGTGTCTAAACTTAAGAATGCTTTAGATCCAACTTCGGATCTGTCCAGCATTGATTCAGATTACGAAAATAAGGATTATAAAAGTGCTGAAGCAAAACTTGCCAAAAATCCTCAGTTAACTATTCTTAAGCAGGCGCTTATCAAGGGTGACAGTGTAAAGAAAGAATACGAGGAGAGACAGAAAATGCTGAGCAAAGCAAAGAAGCAAGGGAATTTATCAAATAAAGACTCGGTTGATCCGGATGCGAAAAGATGGTACTGCGAAGTCTGTCCTGTAAACTTCTCATCAGTTGATGAGCTGAGGGAGCACGAGAAGATTCACGATGCCGACAAGCCTTTTATATGCATTCTGTGCGAAAAAGACTTTGCCCTCAAGTCGTCCTTGAGCAGGCACATACTCTCAGCACATGGCGTCGATCCAACACCCTTGGTAGAGAGCGAAAAATGTTTGAAAAAATCGGTTCAAGAATCGAATGAGCAAACGCCATTTATAAAAGAGGAACAGATTACCAAAGAAGATTCTACGTCGCCATTTTCTGCTGATAATATGGATAATGATGACGATGAGCATGAAAACGGCAATGATAATATGCTAGAAATAGAGACCGTTTTCGTTTGTGAAATCTGTACACGAGACTTTAATGATCGAGCATCATTGTGGCTGCACATTCGAGCTACCCATAAAGAGTATGCGGCATTTGCCTGTGGAGTTTGTCTGAAAATTTGCTCGGACAATGCACAGTTGTTAAATCATGTTAATATGTATCATGGAGGTTCTAAACTTTTAATGTCTGAACAGAGAAGGTACAGTTGTACCATTTGTGGAAGGCAACATGACTCGAGGAAAAAACTCATAACTCATGTGTCAATTCACAATGTGGACCCAGGCTACGATCCTGCTAGTTTTGTACAATTAAACACTAATTATTATAATGAGAATGTAAACAGTAACGAAGGAAATGAACTAATTATGGACTGCGACGACGAGAGCGAGAAAGTAGATTGTTATATTTGCTATAAATCATTCCCCAATGAGGATCACCTAATACGCCATCAAAGAAATGCCCACAAATCCGAGTCACTGGCGCAGCTTGGCGAGTTTGGCAATGGTGGACCGAATGGGCAAAATGGAACTGGCAATCGCGCTCAGTACCATCTGTTTTTCGTTTGTGAGCTTTGTGGCAGCTCACACCCCAGCAAATGGGAACGTTGGTTACACGTTAGCAGTGCACACAATAATGAATCTGCAATCAAGTGCGAACGAGACGATTGCGGAAAAATTTTCTCAACGAAAGCTTTGCGTAACGAGCACGCGCAGCACCACCAGCTGCAGGGCAGCTCACCCAACACTTGCGAAATATGCGGCAAGTTGTGGGGCAGCCGTGTCGATTACTGGAAGCATGTGATGGGTGTGCACGCTGATACGGTGCCGCTTATCTGCGGCGTTTGTCTCAAGGTCTTCCCAGATGTAATGCAGCTCAGCCAGCACGTCAAACTGAAGCATTGGCCCTTGACCAACGGTGATTTCAGTTGTGACATCTGCGGCCGGCCGTACTCGAATAAGAGCAAGATGTCGAGGCACAGAAAGATACACGGCCTTGACGGCGAGATTTATAATCCGTCGGCGACCAACAGTAGCCTCATTATCAACGATGCCTCTATGAGCGAGACGCCGGGCCTACCGATGCCTTTGCAATTGGACAACGGCTTGCCACAACCTATCGATCCGAGTTCAATGGACCTGAGTTGCGAAATGTGCGGTGACCTCAAATTCCCCTGCCTCGAGGATCTCTGCAATCATCGCCGGATGACGCACAATCTCTTCCCCTGCGATCTGTGTAACAAGTGTTACGGGCGTACCTCGCATCTGTGGAAGCACGTGAACCGCGTGCACAAGGGCCACGAGGACGTCACTTGTCGCTTCTGCCTCAAGACCAGCGCCTCCAAAGATCACCTCGCCGCTCACATTGCCAAAATTCACAGATATGAGCCCGACGTCAAGAATGATATGCGAGAGGCTATGATTTATAAGAACAGTAGTTACAACACGGTAGCGTCGGCCGCCTCCGAAGACGATGTTTTGCACTTTTGCGAAAAGTGCAACAAGTCCTTCCACAAACGGTACCTCTTACGTCGTCACATGAAGGGATGTCAGAACTATCGAAAGGATCCTGGCGCCTTGCTCACGCGTTGTCGTGCCTGCGAGCGCATATTTAAAGATCGCGCAAGCTTGCAGAAGCACATAGAAAATCACCACAGCTCTTATGAATGTCATCTATGTAAAGAGACGATTACTTCTAAACTTGGCATAATGACACATAATCGCATGCACCACATGCATCATCCAGACCTCACTTGCGAGCTCGAAACCTGCCGTAAGCTCTTCAGGACGAAGGAGGATTTGGAATCGCATCGCAAGGATCACAAGCACCACGGGATACCGAATGTCTGCGATTTCTGTGGCGATACGGTAGAAAATAAGTTGAAGCTCAAGATGCACATACTAAGTCTGCATAGGAATGAAATCGGGGTTTCCTGCGGAGTTTGCCTGATACCCATGAAAGATCCCAAGGATTTGAAAAAGCACGTTGAAGATGTCCACGATAGTATATTACTGAAGCCAAACACTTGCCAAGTTTGCGGGAAGCAGTATGCTTCCAAGTGGAAAGCCTTTGATCATACGAAGAAGTGTCATGGTAAAGTATTCCGCACGTGCAAACAGTGCCTGGCGGTGTTCACGTCGGATGAGGACCTGCGATACCACTACGAGCACATCCATAACATTCCTAAGGATCAGCTGGATGCCTTCCAGTACCGCCTAGAGATGCCTGGAAGCAAAATGGATGACTACGACCTTGGCCCACTGGAGGTCGTCGTGAAGGAAGAGCCAGAGGAGCTTGATTTCGACGTTGAGCCCTTCGACGACGATAATTGCAACTCGAATGACTCGAAAAGGCGGCGCTCGATGACCGACACCTTCGACTGCGAAATCTGCCCCGAGATCTTCCTGAATCACGAGCTCCTTTCGTCCCATTATCGCAATGTCCACAATACGGATCCAAATCGTATGTTCAAGAAGATTAAACTGGAACCGTTGAACAAGCCCAAGAAGAAGATGCGCGACCGCGAGAATTATGAGTGCAAGAACTGCCAGAAGCAGTTCTGCACGAAGACGCTTTATCTCGGACATGTGAGCGTATGTACGCGTAAGTCGACGTCGATCCTGGAGGCCCACCTGAAGAACAATAACCAGATCAAGCGCGAGGACCCCGAGCCTATCCTTTGTGAGACTAATCTCAACATTCCGGACTTCAATCTCTTCGAGGACATAAACATGCAGCTGTCGGGACAGAAACCAGTACCGAGTCTAATGCCTCTCGGCCACTCCTCTAAAACGTCTTCCTCTAAATACTCGAGGAAGGACTCGCGTAAAGTATACGACGAGTCGACCAATACAGAGTGCACGTGCGAGGTGTGCGGTAAACAGTGGCCAGCCAAGAAGCACCTCTGGCAGCATCTCATTCGCTTCCACAGGGCCGAAGCTGCAGTCACCTGCGGAGTCTGCCTTAAGCTTTGCGCCACCTACGAGGACCTATCCGAGCATCTCAAGAACATTCATCCTTCGATCCTGTCGACCGCAGGCAATAACTTTACCTGCAAGGTTTGCGGGCGATATCATAACGCACGCAGTAAGCTTCTGCTGCACATGAGTATCCACATCAATTGCAAGAGCAATTTCATGTGTCAGCGCTGTAACAGGAGCTTCGAGAGCGAAGATAAGCTTAAAGAGCACGTTCCGAATTGCGCGGGCCCAACCCGAGACGAGGAGGAACAGACTGGCGATACCGAGGATCGGGTGATAAAGGAGGAGAACGAGGAGAAGGGCAGTTTAATCGGCGATGAAGAGGAAGCCGATGAGAACGAGTACGAGTCCGACGATGATAATTCGGATAATAGCAGCTCCGATAATTCCAATGATTCGGACAGTAACAGCAACAGCAGCAGCAACAGCTCGAGCGACGACGATAGCGATAACGATGACGAGGACGGAAGATCGAGGAACGTCGAAGAAGACAGCAGCAATAACAGCAAGGACTCGGATACTGTACAAGAGATACCCGTACAGACCAACGTCAAGCCCCAGATGATGGAGGACAACGAAACGATGAGACCGAGTCCTATGTTACCGATCGCTATCAAAGGAGACGGTAGCGAACAGAACGAAGATAGCCAGGAAGAGCTTCAGGCACGAAGGCGAACTCTTAGCGACTCGCCGAGTGCCAAGAAAGAAAAGAGCGATAGTGAAAACGACAGTAGCAGCGATGAGGCCGAAGAGTCAGAGGACGAGGAGATGCAGCAAGCGCAGCTCGTCGATCCAAATGCCGAGTTTCATGCGGACAACAATTCGAGAAGCAGTAACGAAGGCGAAGAAGAGGAACAAGAGGAGGAGGAGGAAGATGAAGGAGAGGGAGAAGTACAGGAAGTAGAAGAAGAAGAAGAAGAGCAGGAAGAACAGGAGGAAGAGGAACAAGAGCAAGAAGAGCATGAAATGCAAGAAGTGCAAGAAGTTGAGGATGAAGAGGAAGAGCAAGAGGAAGACGAGAATGTCGAACACGGGATGAACGAGGAGGAAGTACTTGAAGTCGATGAAAACGACATGCATAATCTAAACGGCACTGTGCTCATGCTCACCAATGATGCAGACGGCAATCAGATTCTTATTGAGCGCAACATGGCCGATCTTGAGAACGACGATTCTGTTCATGACATGGCGCAGTACGTTTTCCAAGACGGCACGGGCTTTGCCCTCGAGGACTATGAAGCAATCGTCGAGAGCCAGGGTGATGAGGATGACGAGCACCAAGGATTTGAGATGGAGATCGGCAACGCCCAGGAGTGTGTCGAGGAAGAGGAGGAAGACGGCGAAGGGAGAGAACAGATGGAGGAAGTGGATGAGGAGGAGGAAGCGAATGAGGAAGAGGAGGAGGACGAAGATGAACTCAGTTCCAGTGCCAAAAGCTAA
- Protein Sequence
- MENRERYDELCRLCASYDKVKMDLFGKDGKNRQLVDKIHTCLPFKITEDDRLPKCLCYRCMYNLENFYDFRTACVNAVALLERCLPEEPKMQIKQEGEDAEPYSELRMELLKEKESMPMLIPEAPVVNPNAALGTPPRLKSDGEHDPDMDDLAHDHGDIDDRLDEHDDGHKSDEYEMDMETNPSDFLEMSAMVPEEEHLLPHPDSGVFQHRNEQHEVYVCSLCSKAFSSKGHLSLHARIHVGAGDVIGEKVITDDHTSYKRPYQCDLCNKSYSTAKHRWGHVSTTHRGHPAVTCSYCSRIYSTRTNLEEHIKSRHAGLPPPPEVPMSYVQPDSRHQCKTCPKMYTNITDLNKHSRVCLGEQHRKDHSNNTFNPQNFGKRTPVSKLKNALDPTSDLSSIDSDYENKDYKSAEAKLAKNPQLTILKQALIKGDSVKKEYEERQKMLSKAKKQGNLSNKDSVDPDAKRWYCEVCPVNFSSVDELREHEKIHDADKPFICILCEKDFALKSSLSRHILSAHGVDPTPLVESEKCLKKSVQESNEQTPFIKEEQITKEDSTSPFSADNMDNDDDEHENGNDNMLEIETVFVCEICTRDFNDRASLWLHIRATHKEYAAFACGVCLKICSDNAQLLNHVNMYHGGSKLLMSEQRRYSCTICGRQHDSRKKLITHVSIHNVDPGYDPASFVQLNTNYYNENVNSNEGNELIMDCDDESEKVDCYICYKSFPNEDHLIRHQRNAHKSESLAQLGEFGNGGPNGQNGTGNRAQYHLFFVCELCGSSHPSKWERWLHVSSAHNNESAIKCERDDCGKIFSTKALRNEHAQHHQLQGSSPNTCEICGKLWGSRVDYWKHVMGVHADTVPLICGVCLKVFPDVMQLSQHVKLKHWPLTNGDFSCDICGRPYSNKSKMSRHRKIHGLDGEIYNPSATNSSLIINDASMSETPGLPMPLQLDNGLPQPIDPSSMDLSCEMCGDLKFPCLEDLCNHRRMTHNLFPCDLCNKCYGRTSHLWKHVNRVHKGHEDVTCRFCLKTSASKDHLAAHIAKIHRYEPDVKNDMREAMIYKNSSYNTVASAASEDDVLHFCEKCNKSFHKRYLLRRHMKGCQNYRKDPGALLTRCRACERIFKDRASLQKHIENHHSSYECHLCKETITSKLGIMTHNRMHHMHHPDLTCELETCRKLFRTKEDLESHRKDHKHHGIPNVCDFCGDTVENKLKLKMHILSLHRNEIGVSCGVCLIPMKDPKDLKKHVEDVHDSILLKPNTCQVCGKQYASKWKAFDHTKKCHGKVFRTCKQCLAVFTSDEDLRYHYEHIHNIPKDQLDAFQYRLEMPGSKMDDYDLGPLEVVVKEEPEELDFDVEPFDDDNCNSNDSKRRRSMTDTFDCEICPEIFLNHELLSSHYRNVHNTDPNRMFKKIKLEPLNKPKKKMRDRENYECKNCQKQFCTKTLYLGHVSVCTRKSTSILEAHLKNNNQIKREDPEPILCETNLNIPDFNLFEDINMQLSGQKPVPSLMPLGHSSKTSSSKYSRKDSRKVYDESTNTECTCEVCGKQWPAKKHLWQHLIRFHRAEAAVTCGVCLKLCATYEDLSEHLKNIHPSILSTAGNNFTCKVCGRYHNARSKLLLHMSIHINCKSNFMCQRCNRSFESEDKLKEHVPNCAGPTRDEEEQTGDTEDRVIKEENEEKGSLIGDEEEADENEYESDDDNSDNSSSDNSNDSDSNSNSSSNSSSDDDSDNDDEDGRSRNVEEDSSNNSKDSDTVQEIPVQTNVKPQMMEDNETMRPSPMLPIAIKGDGSEQNEDSQEELQARRRTLSDSPSAKKEKSDSENDSSSDEAEESEDEEMQQAQLVDPNAEFHADNNSRSSNEGEEEEQEEEEEDEGEGEVQEVEEEEEEQEEQEEEEQEQEEHEMQEVQEVEDEEEEQEEDENVEHGMNEEEVLEVDENDMHNLNGTVLMLTNDADGNQILIERNMADLENDDSVHDMAQYVFQDGTGFALEDYEAIVESQGDEDDEHQGFEMEIGNAQECVEEEEEDGEGREQMEEVDEEEEANEEEEEDEDELSSSAKS
Similar Transcription Factors
Sequence clustering based on sequence similarity using MMseqs2
- 100% Identity
- iTF_00713110; iTF_00714584; iTF_00713823; iTF_01380779; iTF_01381524;
- 90% Identity
- -
- 80% Identity
- -