Smeg016147.1
Basic Information
- Insect
- Subacronicta megacephala
- Gene Symbol
- lov
- Assembly
- GCA_958496365.1
- Location
- OY292529.1:3773525-3776002[+]
Transcription Factor Domain
- TF Family
- HTH
- Domain
- HTH_psq domain
- PFAM
- PF05225
- TF Group
- Helix-turn-helix
- Description
- This DNA-binding motif is found in four copies in the pipsqueak protein of Drosophila melanogaster [1]. In pipsqueak this domain binds to GAGA sequence [1].
- Hmmscan Out
-
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc 1 1 1.8e-18 1.3e-15 57.5 0.0 1 44 58 101 58 102 0.96
Sequence Information
- Coding Sequence
- ATGGACTCTCCACTGGGGCTGTTCCCACCGGGCATGGAGCACAAGATGTACCCCATGATGGATGTGGAACACCGCGCACCGCTTGATGCACAACTATTTACTAATGTCAAAAAGAAATGGAGACCTAAGGGTCAGCACAGCGCGCCGCGCGGTGGTCCACCTCGGTCGTGGACGAACGCCGAACTCACGGAGGCGCTGCAGCACGTGTGGAACAAAAAGATGACGACGAGCCAAGCTTCCAGAATTTTTGGCATCCCGTACAACTCGCTGCTGATGTACGTGCGCGGAAAGTACGGGAAGAGCCTAAAGCTAGAGCAGCTAAGGAAAGACTGTATCGGCGGACCGCTCGATATGCTTAACCTCAACTCcggcaacaacaacaacaatcaACCTTCAAGCAAACACCACGACAAAGACGACCACCAGAGCTCGGGCCAACGACCAGCGAGCTCCGAGCCAGACATCGCCTCGAATCCAATGTTCAATCCATTCCAGCAAGGGTTTTACCCAGAGTTCCCGCCAGGATTCCCGATGCCGCTTAACATGCTGCATCTACTCCCGCCGAACGACAAAGCGAGGGAACTGTATCAGTCGATGCCGATGGCTCTGGACTCGCTGTCAGTAGTAACGAAAGAGGAAGATTGTAAGAGCGACAGGTCAAAGGAGAACTCAGCCGATGAGGAGGGAGACTCGTACCGCACGCCCTCACACCCGCCGCTTCCGCCCGACAACCGCACGCTTCTGCATCACAACGGACAGGACTAA
- Protein Sequence
- MDSPLGLFPPGMEHKMYPMMDVEHRAPLDAQLFTNVKKKWRPKGQHSAPRGGPPRSWTNAELTEALQHVWNKKMTTSQASRIFGIPYNSLLMYVRGKYGKSLKLEQLRKDCIGGPLDMLNLNSGNNNNNQPSSKHHDKDDHQSSGQRPASSEPDIASNPMFNPFQQGFYPEFPPGFPMPLNMLHLLPPNDKARELYQSMPMALDSLSVVTKEEDCKSDRSKENSADEEGDSYRTPSHPPLPPDNRTLLHHNGQD
Similar Transcription Factors
Sequence clustering based on sequence similarity using MMseqs2
- 100% Identity
- iTF_01425863; iTF_00075398; iTF_00637417; iTF_00017263; iTF_00404625; iTF_00636193; iTF_00018098; iTF_00709107; iTF_01285464; iTF_00785127; iTF_01424967; iTF_00783349; iTF_00383545; iTF_01360542; iTF_00821702; iTF_00072104; iTF_00441416; iTF_00822831; iTF_00450040; iTF_00823840; iTF_01491803;
- 90% Identity
- iTF_00723895;
- 80% Identity
- -