g6215.t1
Basic Information
- Insect
- Amphipyra tragopoginis
- Gene Symbol
- lov
- Assembly
- GCA_905220435.1
- Location
- HG992009.1:18723672-18728691[-]
Transcription Factor Domain
- TF Family
- HTH
- Domain
- HTH_psq domain
- PFAM
- PF05225
- TF Group
- Helix-turn-helix
- Description
- This DNA-binding motif is found in four copies in the pipsqueak protein of Drosophila melanogaster [1]. In pipsqueak this domain binds to GAGA sequence [1].
- Hmmscan Out
-
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc 1 1 6.7e-19 3.8e-16 57.5 0.0 1 44 58 101 58 102 0.96
Sequence Information
- Coding Sequence
- ATGGACTCTCCTTTGGGTCTGTTTCCGCCGGGCATGGAGCACAAGATGTACCCCATGATGGACGTGGAACACCGCGCGCCGCTTGACGCACAGCTATTTACCAATGTTAAAAAGAAATGGAGACCGAAGGGTCAACACAGCGCGCCGCGCGGCGGTCCACCTCGATCGTGGACGAACGCCGAGCTCACGGAGGCGCTGCAGCACGTGTGGAACAAAAAAATGACGACAAGCCAAGCCTCCAGAATTTTCGGTATCCCTTACAACTCGCTGCTGATGTACGTACGCGGGAAGTACGGGAAAAGCCTAAAGCTAGAGCAGCTCAGGAAAGACTGTATCGGCGGACCGCTGGACGTACTAAATCTCAACTCcggcaacaacaacaacaatcaACCTTCAAGCAAACACCACGACAAAGATGACCACGGAAATTCAGGACAACGACCAGCGAGCTCCGAGCCAGACATCGGCTCAAATCCTATGTTCAATCCATTCCAGCAAGGGTTCTACCCAGAGTTCCCGCCAGGATTCCCGATGCCGCTCAATATGCTGCATCTACTCCCGCCGAACGACAAAGCAAGGGAACTGTATCAGTCGATGCCGATGGCTCTGGACTCGCTGTCAGGAGTAACGAAAGAGGAGGATTGTAAGAGCGACAGGTCAAAGGAGAACTCAGCCGATGAGGAAGGAGACTCGTACCGCGCGCCCTCACACCCGCCGCATCCACCCGACAACCGCACGCTTCTTCATCACAACGGACAGGACTAA
- Protein Sequence
- MDSPLGLFPPGMEHKMYPMMDVEHRAPLDAQLFTNVKKKWRPKGQHSAPRGGPPRSWTNAELTEALQHVWNKKMTTSQASRIFGIPYNSLLMYVRGKYGKSLKLEQLRKDCIGGPLDVLNLNSGNNNNNQPSSKHHDKDDHGNSGQRPASSEPDIGSNPMFNPFQQGFYPEFPPGFPMPLNMLHLLPPNDKARELYQSMPMALDSLSGVTKEEDCKSDRSKENSADEEGDSYRAPSHPPHPPDNRTLLHHNGQD*
Similar Transcription Factors
Sequence clustering based on sequence similarity using MMseqs2
- 100% Identity
- iTF_01377391;
- 90% Identity
- iTF_00636193; iTF_00908739; iTF_01197645; iTF_00404625; iTF_01166519; iTF_00809028; iTF_00177033; iTF_00273532; iTF_00274366; iTF_00809982; iTF_00302021; iTF_00037697; iTF_00951713; iTF_00952610; iTF_00124163; iTF_01085059; iTF_01093955; iTF_00041700; iTF_00301092; iTF_00622724; iTF_00685348; iTF_01094820; iTF_00711749; iTF_00924517; iTF_01439814; iTF_00726215; iTF_00928583; iTF_01062727; iTF_01339943; iTF_00040712; iTF_00121321; iTF_00122281; iTF_00363945; iTF_00445033; iTF_00851689; iTF_01030121; iTF_01338505; iTF_00123274; iTF_00172650; iTF_00758058; iTF_00071307; iTF_00373835; iTF_00448939; iTF_00446028; iTF_01084172; iTF_01064557; iTF_01061806; iTF_00850543; iTF_01031055; iTF_01531887; iTF_00043408; iTF_00147217; iTF_01532945; iTF_00042546; iTF_00906034; iTF_00973682; iTF_00831092; iTF_01027220; iTF_00771797; iTF_00120406; iTF_01533846; iTF_00907799; iTF_00888152; iTF_01246744; iTF_00375097; iTF_00906971; iTF_01526939; iTF_01534716; iTF_00038621; iTF_00039710; iTF_00300094; iTF_00036543; iTF_00667263; iTF_01525855; iTF_00447040; iTF_01025952; iTF_01092992; iTF_01192544; iTF_01119237; iTF_01118190; iTF_01117112; iTF_00111545; iTF_01440909; iTF_00683237; iTF_00075398; iTF_00821702; iTF_01302215; iTF_00869546; iTF_00000236; iTF_00001101; iTF_01230448; iTF_00185233; iTF_01221417; iTF_00186061; iTF_00967955; iTF_01332470; iTF_00450040; iTF_01285464; iTF_01491803; iTF_01260029; iTF_00171680; iTF_00327008;
- 80% Identity
- -