Scau003847.1
Basic Information
- Insect
- Stenodera caucasica
- Gene Symbol
- nfxl1
- Assembly
- GCA_037414795.1
- Location
- JAZBGZ010000325.1:31137-34172[-]
Transcription Factor Domain
- TF Family
- zf-NF-X1
- Domain
- zf-NF-X1 domain
- PFAM
- PF01422
- TF Group
- Zinc-Coordinating Group
- Description
- This domain is presumed to be a zinc binding domain. The following pattern describes the zinc finger. C-X(1-6)-H-X-C-X3-C(H/C)-X(3-4)-(H/C)-X(1-10)-C Where X can be any amino acid, and numbers in brackets indicate the number of residues. Two position can be either his or cys. This family includes Swiss:P40798, Swiss:Q12986 and Swiss:P53971. The zinc fingers in Swiss:Q12986 bind to DNA [1].
- Hmmscan Out
-
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc 1 18 3 1.4e+04 -7.8 5.6 15 19 166 170 165 170 0.81 2 18 0.2 9.4e+02 -0.3 0.4 4 10 201 207 200 207 0.95 3 18 2.1e-07 0.001 18.7 17.3 1 19 215 232 215 232 0.99 4 18 2e-10 9.4e-07 28.4 13.8 1 19 268 286 268 286 0.98 5 18 4.1e-10 2e-06 27.4 13.1 1 19 321 339 321 339 0.99 6 18 0.00034 1.6 8.5 11.5 1 18 374 391 374 392 0.95 7 18 0.35 1.7e+03 -1.1 0.3 1 4 401 404 401 407 0.91 8 18 5.2e-05 0.25 11.1 16.8 1 18 426 443 426 444 0.94 9 18 3.9e-10 1.9e-06 27.5 10.8 1 18 453 470 453 471 0.97 10 18 1 5e+03 -2.7 1.1 5 10 499 504 499 504 0.94 11 18 0.015 72 3.3 4.4 9 19 519 529 517 529 0.90 12 18 0.041 2e+02 1.9 4.4 4 12 541 549 539 549 0.89 13 18 3 1.4e+04 -6.9 4.5 14 18 577 581 577 581 0.86 14 18 0.52 2.5e+03 -1.7 1.2 6 10 608 612 607 612 0.85 15 18 2.3e-05 0.11 12.2 5.0 1 12 618 629 618 629 0.96 16 18 2.2 1.1e+04 -3.7 0.5 14 18 642 646 642 647 0.76 17 18 4.5e-06 0.022 14.5 17.9 3 19 659 675 658 675 0.94 18 18 1.5e-05 0.072 12.8 10.9 1 16 718 732 718 738 0.92
Sequence Information
- Coding Sequence
- ATGAACCATCAACAAAAGCCACGTAATCCGTGGAATAAAAATCTACAACCAtctgttaaaaataaaacgaatacCGGTAAACAGAAAAATCCAAATCCCACACCGTCAGAACTGCGATTTAAACAAGCGCAAATTCAATTACAAGCAGCTGTTGAAAAACATATCAAAGATTATGAATCTTCATCTTCAGAAGATGAACTAGAATCAGATAATTTGATtgATGgaattttgaagaattataCCCAAACTGGTGGTAAAGATGAATATTTAGGACGTACAAAGACTTTTTTACAAGACACTTTAATATCGGGAGCTGCAATTTGTCTAATTTGCATTTCCAGAATTAAACGGGAAATTGCAATTTGGCACTGTAAAGAATGTTATTGTTTCTTCCATTTGGATTGTATACAGAAATGGTCGAAAGATTGTATTTTTCAACAGAAACAAAATCTTGAtagttctattattataaaacaaaaactttcaaCATGGTGCTGTCCGAAATGTCGTCACGATTATCAATTCGAAGATATTCCAcagaaatattattgtttttgttataaaacaGTTAATCCAAAATATCAACCATTATTGGTTCCACATTCTTGTGGGGAGATTTGCCGGAAAGATTTACAGCCATTTTGTGGACATCagtgtttgttgttgtgtcATCCTGGACCTTGTCCACCATGTCCAGTAACGGTAACTGTGAGTTGTTATTGTGGCAAACAAACACCACGGATGCAACGTTGCAGTAAAAAAGAATGGTCCTGTGGGAATCGTTGTAGTAAATTATTAACTTGTGGTAAACATTCATGTTCTGAACTATGTCATTCTGGTGATTGTCCACCCTGTTCGAAGAAAAGTCTACAGAAATgtttgtgtaaaaatcaacAGAAATTACGTGACTGCGCATCGCCAATTTGGCAATGTGATAAAatttgCGACCAGCCTTTAGATTGTGGTAATCATAATTGTTCAGTTGTTTGTCATTCAGGCAACTGTGATCCATGTCCATTAACTTTACCAAGAACTTGTCCATGTGgtaaaacaaaatatcaacTTCCTTGTACTAAAGAGACGCCAACATGTCTAGATACTTGTGGCAAATTATTGGATTGTGGTCAACATATTTGTAACCAAAGATGTCATAAAGAGACTTGTGGTTTGtgTTTAGAAATCGTCGAGAAATGGTGCAGATGCGGCCAACATTCCAAACAAGTTAATTGTTATAAGTCGTACTTTTGCGAAACAAAATGTAAACAAATGCGTGACTGTAATCGACATCCTTGCAATCGAAAGTGTTGCGATGGCAATTGTCCACCATGTGAGAAACCATGCGGTCGTACATTAAATTGTGGCAACCATAAATGTAATTCTGTATGTCATCGTGGACTTTGTTATCCATGCAATCAAACAGAAACTGTAACTTGTCGATGTGGTGTTACAAAATTGACAGTTTCTTGTGGACGAAAAAATCGAACCAAACCACCAAAATGTAGTAAACTTTGTTCgaTTCCACCTGATTGTCACCACGAGAAAAGAGAAGCTCATAAATGCCATTTCAATGATTGTCCACCTTGTCGACAAATTTGCAAGAAATCGAGATCGAATTGTTTGCATCCGTGTCCAGCTATTTGTCATTCGGTAGTTTTTGTGAAGATTGAAGAACAGAAAGCCTCAATGCCTTGGGAGCAAACCGGGCCactaatcgaaaaaaaatcattaccATGTCCCGATTGTATTGTTCCTCTACCTATCACTTGTCTtgGAGGGCACGAAACCACAAACTGGCCCTGCTATAAAGCTCAACCATCCAGTTGCCAAAGACCTTGTGGTAGACTTCTTAGTTGCGGGAATCATTCATGTTCTCTTCTTTGCCATCGTGTGGAAGACGCTCCCGATCAAATTCATGCTGGAACAAATTGTGAAACGTGTGAAAATGGCTGTAGTAAAGAACGTCCAGAAGGCTGTCAACATGACTGTTTAAAACCATGCCACCCGGGTCCATGTCCACCATGTAAACAAATGGTCCGCATTCGGTGCCATTGTGGCCTCAACCAGCCCTACATTccatgttatttattattgaatccgAAAAAACAAGAAGAAATTCAAAGTTGCGCCAACCAGTGTCCCAAAAACttcgAGTGTGGTCATCGTTGTCGTGCTAACTGCCATTCTGGCGCGTGTCCCAATCCGGAATTGTGCAAGAAAAAAGTCAAAATCACATGTAAATGTAAACGAATCAAAAAGGAATTTGCGTGTGAAATTGTACGTAATGGCAATATAAATGTGGATTGTGATGCTGTTTGTGAACAGAAATTGGAAGAACAACGCCGTGAACAGGAAGCTATCAATGAACGTAAGCGGCGCgaagaagaattgaaaaatcgaaaagaattggagaaatatcaaaaaatgtTTGAGGGCAAAAAGAGGAATCGGGAACGGCGCATTTATAAAGAAGAACAACAAGAAAGTTTCTTtaggaaatataaaattggttTTATCGCAGCAACTGGGGCTTTATTCGCTATTTTAGTCGTTTTTATTGTCACTTCAACATAA
- Protein Sequence
- MNHQQKPRNPWNKNLQPSVKNKTNTGKQKNPNPTPSELRFKQAQIQLQAAVEKHIKDYESSSSEDELESDNLIDGILKNYTQTGGKDEYLGRTKTFLQDTLISGAAICLICISRIKREIAIWHCKECYCFFHLDCIQKWSKDCIFQQKQNLDSSIIIKQKLSTWCCPKCRHDYQFEDIPQKYYCFCYKTVNPKYQPLLVPHSCGEICRKDLQPFCGHQCLLLCHPGPCPPCPVTVTVSCYCGKQTPRMQRCSKKEWSCGNRCSKLLTCGKHSCSELCHSGDCPPCSKKSLQKCLCKNQQKLRDCASPIWQCDKICDQPLDCGNHNCSVVCHSGNCDPCPLTLPRTCPCGKTKYQLPCTKETPTCLDTCGKLLDCGQHICNQRCHKETCGLCLEIVEKWCRCGQHSKQVNCYKSYFCETKCKQMRDCNRHPCNRKCCDGNCPPCEKPCGRTLNCGNHKCNSVCHRGLCYPCNQTETVTCRCGVTKLTVSCGRKNRTKPPKCSKLCSIPPDCHHEKREAHKCHFNDCPPCRQICKKSRSNCLHPCPAICHSVVFVKIEEQKASMPWEQTGPLIEKKSLPCPDCIVPLPITCLGGHETTNWPCYKAQPSSCQRPCGRLLSCGNHSCSLLCHRVEDAPDQIHAGTNCETCENGCSKERPEGCQHDCLKPCHPGPCPPCKQMVRIRCHCGLNQPYIPCYLLLNPKKQEEIQSCANQCPKNFECGHRCRANCHSGACPNPELCKKKVKITCKCKRIKKEFACEIVRNGNINVDCDAVCEQKLEEQRREQEAINERKRREEELKNRKELEKYQKMFEGKKRNRERRIYKEEQQESFFRKYKIGFIAATGALFAILVVFIVTST
Similar Transcription Factors
Sequence clustering based on sequence similarity using MMseqs2
- 100% Identity
- iTF_00814085; iTF_00987531; iTF_00930001; iTF_00814770; iTF_00842328;
- 90% Identity
- -
- 80% Identity
- -