Basic Information

Gene Symbol
nfxl1
Assembly
GCA_037464855.1
Location
JAZBHA010000095.1:1-2805[-]

Transcription Factor Domain

TF Family
zf-NF-X1
Domain
zf-NF-X1 domain
PFAM
PF01422
TF Group
Zinc-Coordinating Group
Description
This domain is presumed to be a zinc binding domain. The following pattern describes the zinc finger. C-X(1-6)-H-X-C-X3-C(H/C)-X(3-4)-(H/C)-X(1-10)-C Where X can be any amino acid, and numbers in brackets indicate the number of residues. Two position can be either his or cys. This family includes Swiss:P40798, Swiss:Q12986 and Swiss:P53971. The zinc fingers in Swiss:Q12986 bind to DNA [1].
Hmmscan Out
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc
1 18 3 1.4e+04 -4.8 1.9 15 19 175 179 175 179 0.85
2 18 0.17 8e+02 -0.1 0.4 4 10 210 216 209 216 0.95
3 18 1.8e-07 0.00085 19.0 17.3 1 19 224 241 224 241 0.99
4 18 1.7e-09 7.8e-06 25.5 14.3 1 19 277 295 277 295 0.97
5 18 2.8e-08 0.00013 21.6 10.6 1 19 330 348 330 348 0.99
6 18 1.7 7.8e+03 -3.3 1.0 5 10 372 377 372 377 0.86
7 18 8.3e-07 0.0039 16.8 11.5 1 18 383 400 383 401 0.96
8 18 0.39 1.8e+03 -1.3 0.5 1 4 410 413 410 414 0.89
9 18 4.5e-05 0.21 11.3 16.8 1 18 435 452 435 453 0.94
10 18 4.6e-10 2.1e-06 27.3 9.5 1 18 462 479 462 480 0.97
11 18 0.78 3.7e+03 -2.2 1.0 5 10 508 513 508 513 0.94
12 18 0.00066 3.1 7.6 7.4 10 19 529 538 526 538 0.90
13 18 0.019 90 2.9 5.0 1 12 548 558 548 558 0.90
14 18 3 1.4e+04 -4.6 2.8 14 18 586 590 586 591 0.87
15 18 0.45 2.1e+03 -1.5 1.2 6 10 617 621 616 621 0.85
16 18 3.7e-06 0.018 14.8 4.9 1 11 627 637 627 638 0.96
17 18 3.9e-06 0.018 14.7 17.9 3 19 668 684 667 684 0.94
18 18 8.5e-06 0.04 13.6 13.0 1 16 727 741 727 747 0.92

Sequence Information

Coding Sequence
ATGAATCAACGACAAAAACCGCGCAATCCTTGGAATAAAAATCaaccgcaacaacaacaacaacaacaccaacaaccatctggtaaaaatacaaaaaataccGGTAATCGAAAAAATTTAGCTCCTACACCGtctgaattgaaatttaaagaaGCACAAACTAAACTACAAGCAGCTGTTGAGAAACATATAAAAGATTACGAGTCCTCTTCGTCTGAAGATGAATTAGAGTCAGATAGTGTTATTGatggaatattgaagaattataCACAAACTGGTGGCCAAGATGAATATCTAGGACGTACGAAAGCTTTCTTACAAGATGCTTTGATGTCCGGTGCTGcgatttgtttaatttgtatttcaagGATTAAACGTGAATCAGCCATTTGGAATTGTACAGAATGTTACTGTTTTTTCCATTTAGATTGTATACAAAAATGGTCAAAAGATTGTGTATTTCAacagaaacaaattattgaaaattctaccAATATAAAACCAAATATTCCAACCTGGGGTTGTCCGAAATGTCGTCACAATTACAAATTTGAACACATTCCAGAAAACTACTACTGTTTCTGTCGAAAAACCGTAAATCCCAAATACCAACCATTATTAGTACCACATTCTTGTGGTGAAATTTGTCGAAAAGATCTACAACCTTTATGTGGACATCAATGTTTACTATTATGTCATCCAGGACCTTGTCCCCCATGTCCAGTAACAGTTTCTGTAACTTGTTATTGTGGTAAACAATCACCTAGAACACAAAGATGTTGTAATAAAGAATGGTCCTGTGGGAATCGttgtggaaaattattaacttgTAGTAAACATACTTGTTCGGAACCATGTCATGCTGGTGATTGTCCACCGTGTTCAAAGAAAAGTCTACAGAAATGTTTATgtagaaatcaacaaaaattacgtGATTGTTCCTCGTCCATTTGGCAATGTGATAAGATCTGTAACAAACCTTTAGATTGTGGTAATCATAATTGTTCAGTTATTTGTCATTCAGATGATTGTGATCCATGTCCATTAACTTTACCACGAACTTGTCCATGTGGTAAAACGAAATATCAACTTCCTTGTACTAAAGAGACACCAACATGTCCGGATACTTGTGGTAAATTATTGGATTGTGGTCAACATACGTGTAACCAAAGGTGTCATAAAGACGATTGTGGTTTGtgtTTAGAAATTGTTGAGAAACGCTGCAGATGCGGTCAACATTCCAAAGAAATTAGTTGTTATAAACCGTATTTTTGTGAAACGAAATGTAAACAAATACGAGATTGTAATCGACATCCTTGCAATAGAAAAtgtTGTGATGGTAATTGTCCACCTTGTGAGAAACCCTGTGGCCGTACATTAAATTGTGGTAATCATAAATGTAATTCTGTATGTCACCGTGGATTCTGTTATCCATGTAATCAAATGGAAGTTGTAACATGTCGATGTGGTGCTACCAAATTAACAGTTTCATGTGGACGAAAAAATCGAACTAAACCACCAAAATGTAATAAACTCTGTCAaatGCCTCCTGATTGTCATCACGAGAAACGAGAACCACATAGATGTCATTTCGGTGATTGTCCACCTTGTCGACAGATTTGCAACAAATCTAGAACAACTTGTTCGCATCCATGTCCAGTTGTTTGTCATTCAGCAGTTCTCGTGAAAATTGAAGCACAGAAAGCTTCAATGCCTTGGGAACAAACACGGccacaaattgaaaaaaaatcactgcCTTGTCCTGACTGTGTAGTTCCACTTCCAGTTACTTGTCTCGGTGACCACGAAACAACCGATTGGCCATGTTATAAAGCCCAACCGTCCAGTTGCCAGAGACCTTGTGGTAGATTATTGGCTTGTGGAAATCACACTTGTTCGTTGTTGTGTCATGTTGTTGAAGATGCTCCAGATGATATTCAAGCTGGAACAAATTGTGAAATATGTGAAAGTATGTGTACTAAAGAACGTCCAGAAGGTTGTCAACATGACTGTCTTAAACCATGCCATCCTGGTCCTTGTCCACCATGTAAACAAATGGTACGAATCTGGTGTCATTGTGGCCTTAATCAACCGTACATTCCATGTTATTTGTGGTTGGATCCAGAAAAACGGGAGGAGATCCAGAGTTGTGGCAATCAATGTCCTAAAAACTTTGATTGTGGACATCGTTGTCGGGCAAATTGCCATCCAGGTCCGTGTCCAAATCCAGAATTATGCAAGAAA
Protein Sequence
MNQRQKPRNPWNKNQPQQQQQQHQQPSGKNTKNTGNRKNLAPTPSELKFKEAQTKLQAAVEKHIKDYESSSSEDELESDSVIDGILKNYTQTGGQDEYLGRTKAFLQDALMSGAAICLICISRIKRESAIWNCTECYCFFHLDCIQKWSKDCVFQQKQIIENSTNIKPNIPTWGCPKCRHNYKFEHIPENYYCFCRKTVNPKYQPLLVPHSCGEICRKDLQPLCGHQCLLLCHPGPCPPCPVTVSVTCYCGKQSPRTQRCCNKEWSCGNRCGKLLTCSKHTCSEPCHAGDCPPCSKKSLQKCLCRNQQKLRDCSSSIWQCDKICNKPLDCGNHNCSVICHSDDCDPCPLTLPRTCPCGKTKYQLPCTKETPTCPDTCGKLLDCGQHTCNQRCHKDDCGLCLEIVEKRCRCGQHSKEISCYKPYFCETKCKQIRDCNRHPCNRKCCDGNCPPCEKPCGRTLNCGNHKCNSVCHRGFCYPCNQMEVVTCRCGATKLTVSCGRKNRTKPPKCNKLCQMPPDCHHEKREPHRCHFGDCPPCRQICNKSRTTCSHPCPVVCHSAVLVKIEAQKASMPWEQTRPQIEKKSLPCPDCVVPLPVTCLGDHETTDWPCYKAQPSSCQRPCGRLLACGNHTCSLLCHVVEDAPDDIQAGTNCEICESMCTKERPEGCQHDCLKPCHPGPCPPCKQMVRIWCHCGLNQPYIPCYLWLDPEKREEIQSCGNQCPKNFDCGHRCRANCHPGPCPNPELCKK

Similar Transcription Factors

Sequence clustering based on sequence similarity using MMseqs2

100% Identity
iTF_01366724;
90% Identity
-
80% Identity
-