Basic Information

Gene Symbol
nfxl1
Assembly
GCA_013841185.1
Location
JACDRP010000082.1:102900-106230[-]

Transcription Factor Domain

TF Family
zf-NF-X1
Domain
zf-NF-X1 domain
PFAM
PF01422
TF Group
Zinc-Coordinating Group
Description
This domain is presumed to be a zinc binding domain. The following pattern describes the zinc finger. C-X(1-6)-H-X-C-X3-C(H/C)-X(3-4)-(H/C)-X(1-10)-C Where X can be any amino acid, and numbers in brackets indicate the number of residues. Two position can be either his or cys. This family includes Swiss:P40798, Swiss:Q12986 and Swiss:P53971. The zinc fingers in Swiss:Q12986 bind to DNA [1].
Hmmscan Out
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc
1 18 2 1.2e+04 -5.0 1.9 15 19 166 170 166 170 0.85
2 18 0.13 8.1e+02 -0.3 0.4 4 10 201 207 200 207 0.95
3 18 1.4e-07 0.00087 18.8 17.3 1 19 215 232 215 232 0.99
4 18 1.4e-10 8.5e-07 28.4 14.4 1 19 268 286 268 286 0.98
5 18 1.3e-08 8.1e-05 22.0 10.9 1 19 321 339 321 339 0.99
6 18 1.3 8e+03 -3.5 1.0 5 10 363 368 363 368 0.86
7 18 5.5e-07 0.0034 16.9 12.0 1 18 374 391 374 392 0.97
8 18 0.24 1.5e+03 -1.1 0.3 1 4 401 404 401 407 0.91
9 18 0.00012 0.76 9.4 15.3 1 18 426 443 426 444 0.94
10 18 2.6e-10 1.6e-06 27.5 10.8 1 18 453 470 453 471 0.97
11 18 1.1 7e+03 -3.3 1.5 5 10 499 504 499 504 0.94
12 18 7.9e-05 0.49 10.0 5.6 9 19 519 529 517 529 0.91
13 18 0.016 1e+02 2.5 3.9 1 12 539 549 539 549 0.89
14 18 2 1.2e+04 -4.8 3.5 14 19 577 582 577 582 0.86
15 18 0.34 2.1e+03 -1.7 1.2 6 10 608 612 607 612 0.85
16 18 0.00015 0.94 9.1 4.6 1 11 618 628 618 629 0.97
17 18 1.5e-05 0.094 12.3 18.6 4 19 660 675 658 675 0.93
18 18 4.5e-06 0.028 13.9 12.1 1 16 718 732 718 738 0.92

Sequence Information

Coding Sequence
ATGATGAATCAACAGAAGCCACGAAATGTGTGGAATAAAAGTCAACAACAACCGTCTAGTCGTAGGAGTCAAGCCGGCAAACATCGAAATACAAATCCAACACCATCCGAATTGAAATTCAAAGAAGCCCAAATTAAATTACAAGCAGCTGTTGAGAAACATTTAAAAGATTACGAGTCTTCATCGTCTGAAGATGAATTAGAATCGGATAATCTTATCGGTGGAATTATAAAGAATTATACACAAACCGGTGGTGTGGATGCGAATTTAGAGCGCACGAAAGCTTTCCTACAGGACACTTTAATATCCGGTGCTGCAATTTGTTTGATTTGCATTTCGAGAATTAAACGAGACAATGCTATTTGGAATTGTACGAAATGCTATTGTTTCTTCCATCTGGATTGTATACAAAAATGGTCGAAAGATTCGATGTTCCAACAGAAACAAATAATCGACAATTCTGTTAATATTAAACAGAAATTATTAACATGGGGCTGTCCAAAATGCCGCCACGATTACAAATTAGAAGACATACCAGATAAATATTATTGTTTCTGTCGTAAAACAATAAATCCAATATATCAACCGTTATTGGTGCCGCATTCATGTGGTGAGATTTGTAGAAAAGATCTAGAACCGAAATGTGGACATCAATGTTTATTGTTGTGTCATCCTGGTCCATGTCCACCGTGTCCTGTTACTGTTACTGTTAGTTGTTATTGTGGCAAACAATCACCGAAAATCCAAAGATGTAGTAATAAAGAATGGTCGTGTGGTAAACGTTGTGGTAATTTATTGAGTTGTGGTAAACATACGTGCTCGGAAGCATGTCATTCTGGTGATTGTCCACCCTGTTCAAAGAAAAGTTTACAGAAATGTCTGTGCAAGAATCAACAAAAATTACGTGATTGTTCCTCGCCTATTTGGCAATGTGATAAAATTTGTAACAAGCCTTTAGATTGTGGTAATCATAATTGTTCAGTTGTTTGTCATTCAGATGATTGTGATCCATGTCCATTAACATTACCGAGAACTTGTCCATGTGGTAAAACAAAATATCAACTTCCTTGCACTAAAGACACACCAACTTGTCCTGATACTTGCGGTAAATTATTAGATTGTGGTCAACATACTTGTAATCAACGGTGTCATAAAGAGGCTTGTGGTGTGTGTTTAGAAATTGTCGAAAAACGCTGTCGTTGCGGCCAACATTCGAAACAAGTCAATTGTTACAAACCGTACTTTTGTGAAACTAAATGTAAACAAATACGAGATTGTAATCGACATCCGTGTAATAGAAAGTGTTGTGATGGTTATTGTCCACCCTGTGAAAAACCCTGCGGCCGTACACTGAATTGTGGTAACCACAAATGTAATTCTGTATGCCATCGTGGACTTTGCTATCCATGTAATCAAACTGAAACTGTAACTTGTCGATGTGGTGCTACAAAATTGACAGTTTCTTGTGGACGAAAGAATCGTACAAAACCACCGAAATGCACTAAACTCTGTTTGATTCCACCTGATTGCCATCACGAGAAACGAGAAGCCCACAAATGTCATTTCGGTGATTGTCCACCGTGTCGACAAATCTGCAATAAAACACGATCGACTTGTTCGCATTTGTGTCCGGCTATTTGTCATTCAGTCGTTTTGGTTAAAGTAGAAGGGCAGAAAGCTTCGATGCCATGGGAGCAAACTGAACCGCAAATTGAACGAAAATCTTTACCGTGTCCGGATTGTAAAGTTCCTGTACCAGTTACGTGTTTAGGTGGTCATGAAACTTCTAATTGGCCTTGTCATATGGCTAAACCTTCCAGTTGCCAAAGACCTTGTGGTAGATTTCTAGATTGTGGAAATCACATTTGTACGCTACCTTGTCATCTTGTAGAAGACGCTCCAGACCAAAGTCGAGCTGGGAAAAATTGCGAAATTTGCGAAGGTGGTTGTACCAAAGAACGACCAGAAGGTTGTCCGCATGATTGTTTAAAACCATGCCACCCGGGCCCTTGTCCTCCATGTAAACAGATGATTCGAATTCGGTGTCATTGCGGCCTTAATCAACCGTACATTCCCTGTTATCAATGGTTAGATTTAGAGAAACGTGAAGAAATCCAAAGTTGTGGCAGTCAATGCCCTAAAAATTTTGATTGTGGTCATCGTTGCCGGGCTAATTGCCATTCCGGACCGTGTCCTAATCCGGAATTGTGCAAGAAAAAATTGAAAATTTCATGTAAATGTAAACGAATCAAACGAGAATTTCCATGTGACATTGTACGTAACACAAATGTAACAGTTGATTGTGACGATATTTGTAAACAAAAATTAGAAGAACAACGTAAAGAATTGGAAGCTATAAATGAACAAAAACGCCGTGAAGAAGAGATCAGAAATCAGAAAGAATTGGAAAAATATCAAAAGATATTTGAAGGTAAGAAGAAGAATCGTGAACGACGTGTCTATAAAGAAGAAGAACAAGAAAGTTGGTTGAAAAAATATAAAATTGCTTTGATTGCAACAATCGGCGCGATACTTTCTATCTCGATTGTTTATTTTTGTTCTTAA
Protein Sequence
MMNQQKPRNVWNKSQQQPSSRRSQAGKHRNTNPTPSELKFKEAQIKLQAAVEKHLKDYESSSSEDELESDNLIGGIIKNYTQTGGVDANLERTKAFLQDTLISGAAICLICISRIKRDNAIWNCTKCYCFFHLDCIQKWSKDSMFQQKQIIDNSVNIKQKLLTWGCPKCRHDYKLEDIPDKYYCFCRKTINPIYQPLLVPHSCGEICRKDLEPKCGHQCLLLCHPGPCPPCPVTVTVSCYCGKQSPKIQRCSNKEWSCGKRCGNLLSCGKHTCSEACHSGDCPPCSKKSLQKCLCKNQQKLRDCSSPIWQCDKICNKPLDCGNHNCSVVCHSDDCDPCPLTLPRTCPCGKTKYQLPCTKDTPTCPDTCGKLLDCGQHTCNQRCHKEACGVCLEIVEKRCRCGQHSKQVNCYKPYFCETKCKQIRDCNRHPCNRKCCDGYCPPCEKPCGRTLNCGNHKCNSVCHRGLCYPCNQTETVTCRCGATKLTVSCGRKNRTKPPKCTKLCLIPPDCHHEKREAHKCHFGDCPPCRQICNKTRSTCSHLCPAICHSVVLVKVEGQKASMPWEQTEPQIERKSLPCPDCKVPVPVTCLGGHETSNWPCHMAKPSSCQRPCGRFLDCGNHICTLPCHLVEDAPDQSRAGKNCEICEGGCTKERPEGCPHDCLKPCHPGPCPPCKQMIRIRCHCGLNQPYIPCYQWLDLEKREEIQSCGSQCPKNFDCGHRCRANCHSGPCPNPELCKKKLKISCKCKRIKREFPCDIVRNTNVTVDCDDICKQKLEEQRKELEAINEQKRREEEIRNQKELEKYQKIFEGKKKNRERRVYKEEEQESWLKKYKIALIATIGAILSISIVYFCS

Similar Transcription Factors

Sequence clustering based on sequence similarity using MMseqs2

100% Identity
iTF_01366724;
90% Identity
iTF_00814085;
80% Identity
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