Scau000914.2
Basic Information
- Insect
- Stenodera caucasica
- Gene Symbol
- lrrfip2
- Assembly
- GCA_037414795.1
- Location
- JAZBGZ010000036.1:61470-66174[+]
Transcription Factor Domain
- TF Family
- LRRFIP
- Domain
- LRRFIP domain
- PFAM
- PF09738
- TF Group
- Unclassified Structure
- Description
- LRRFIP1 is a transcriptional repressor which preferentially binds to the GC-rich consensus sequence (5'- AGCCCCCGGCG-3') and may regulate expression of TNF, EGFR and PDGFA [1]. LRRFIP2 may function as activator of the canonical Wnt signalling pathway, in association with DVL3, upstream of CTNNB1/beta-catenin [2].
- Hmmscan Out
-
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc 1 2 1.1e-112 5.1e-109 363.9 35.6 1 300 58 360 58 360 0.91 2 2 0.049 2.4e+02 0.5 4.4 120 174 358 409 357 433 0.79
Sequence Information
- Coding Sequence
- ATGGACGGCGTTGGTGGCCGAAGACGTCTTGCTGCCAAATCGTCTGCTGAAGACCAGGCACTTGACCAAATTGCTAAAGAGGGCGAAACTTCTGATTTTGGTGATAATAATCGGACTGTTtgtgttgatgatgatgttattgAAACAATGTTGCAAAAGTCTAGCGATAAagCAGAAGCACGACTTTGGGCCAAAAGACAGGCCAGAGCTGAAGCTAGAGAAATACGTATGCGCGAACTGGAGCGTCAACAGAAAGAACAAGAAGAAAATGCTGATCGACAATTCGATATGTTGGCTGAACCAATATCAAGAACATCCAGGACAATTACAGGAGGCAGCAGGTATCTGTCAAGTAGACGAAGCTCTGAAGATTCCTTGGAAGATGGTGGTAGTCTTCGAGACTTACGGAATGAATTAAAAGAAGTCGAAGAGAAATTCCGGAAAGCGATGATTGCTAATGCTCAacttgataatgataaaaccGCCCAAACTTATCAACTGGAACTACTCAAAGATAgaatagaAGAATTAGAAGAGGAACATTCACAATTGAAACGAGAACATCGAGAAAAATGTCGAGAATGTGATCAGTTGAAACGTTTATGTGCAAAATTAAAAGATGATTTGGCTGTGACTCAAGCTGAACTTATAGAAAGAGATCAATTGATAACTGAAAAAGGTTTAGTAATTGTTGGTGATgagataataattgaagaggAGCAAAGAAATGGCGATATTagtcttaataataataataataacaataatagtttaAATAGTACATCAAGAAAAACATTAGTTAGTATTGAAAATGcacaattattagaaagtGCAGGTGAAGGTAGTTTGGATGTACGATTAGCGAAATTTGCAAAAGAAAAATGTGAATTACAAGATCAAATTAGtcatttaaaattagaattagaagAAGAGCGAAGTAAACGGAAAAAATCTGGAAATACACAAAATGGACCATCTTCTGATTATGATACAGATGAAATTGATATACaaagaGAAGCTAATAGACAATTAGgtgattataaatttagagCACAAAAAGCTGAACAAGATGTAGCTACATTACAAGCAACTGTAGCTAGATTGGAAAGTCAAGTAATTCGATATAAAGCATCAGCTGAAATGTCTGAAAAATCAGAAGAAGCactgaaattagaaaaaagaaaattacaaagaGAAgCGAGAGAAGCATTAAGTCGTGCTGAAGAATTGGAAACATCAAATACGCATCTTTTAAAACGTTTAGATAAATTGAAGAATGCCAAATCGGCTTTATTGAAAGAACTCTGA
- Protein Sequence
- MDGVGGRRRLAAKSSAEDQALDQIAKEGETSDFGDNNRTVCVDDDVIETMLQKSSDKAEARLWAKRQARAEAREIRMRELERQQKEQEENADRQFDMLAEPISRTSRTITGGSRYLSSRRSSEDSLEDGGSLRDLRNELKEVEEKFRKAMIANAQLDNDKTAQTYQLELLKDRIEELEEEHSQLKREHREKCRECDQLKRLCAKLKDDLAVTQAELIERDQLITEKGLVIVGDEIIIEEEQRNGDISLNNNNNNNNSLNSTSRKTLVSIENAQLLESAGEGSLDVRLAKFAKEKCELQDQISHLKLELEEERSKRKKSGNTQNGPSSDYDTDEIDIQREANRQLGDYKFRAQKAEQDVATLQATVARLESQVIRYKASAEMSEKSEEALKLEKRKLQREAREALSRAEELETSNTHLLKRLDKLKNAKSALLKEL
Similar Transcription Factors
Sequence clustering based on sequence similarity using MMseqs2
- 100% Identity
- iTF_00929573;
- 90% Identity
- iTF_01566242;
- 80% Identity
- -