Scal032832.1
Basic Information
- Insect
- Stenodema calcarata
- Gene Symbol
- bab2
- Assembly
- GCA_963920205.1
- Location
- OY986060.1:5450501-5463354[-]
Transcription Factor Domain
- TF Family
- HTH
- Domain
- HTH_psq domain
- PFAM
- PF05225
- TF Group
- Helix-turn-helix
- Description
- This DNA-binding motif is found in four copies in the pipsqueak protein of Drosophila melanogaster [1]. In pipsqueak this domain binds to GAGA sequence [1].
- Hmmscan Out
-
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc 1 4 5.1e-13 3e-10 40.9 0.0 1 39 395 434 395 438 0.90 2 4 6.7e-12 3.9e-09 37.3 0.0 1 39 449 487 449 490 0.95 3 4 3.9e-17 2.3e-14 54.1 0.0 2 45 505 549 504 549 0.98 4 4 2.4e-17 1.4e-14 54.7 0.1 1 43 556 599 556 600 0.95
Sequence Information
- Coding Sequence
- ATGTACTTTGGGTACCACAGTGACGGAGGTGAGGAAGGGGAGGACATGAGCTCGCAGCACTACTGCCTCCGGTGGAACAATTACCAATCAAACATGACGTCAGTGTTCCACCATCTCCTGAGGACGCAGTCGTTCGTCGACGTCACGCTGGCCTGCAACGATCAGTCTCTCAAAGCTCACAAGgtCGTGTTGTCAGCCTGCTCGTCGTATTTCCAAAAACTCCTCCTGGAGAACCCTTGCAAGCACCCGACCATCATCATGCCGCAGGATGTCTGCTTCACAGATCTCAAGTTCATAATTGAATTCGTCTACAAAGGAGAAATTGACGTGTCTCAAGCTCAACTCCAAAGCCTCCTGAAGACTGCTGATCAATTGAAGATCAAGGGTCTCTGCGAGGTGCCTGAAGGTAAATCCGGGGCGGAGGTGACTCCATTGCCCTGCACGCCACCCAGGAAAGGTCTGTCGGTGAGGCGTAGGAAACTTGTGTCCGCCAAGAGACGGCTTCTGTACAGGGAGCGCCTCCTTCACAAAACATCTTCCCCAATTGCCAATGACGTCAGCAGACGAGCGTTGACGAAAAAAGAGGCGGAAACCAACTGCATGGATGTGGCGACTGGTACGGAGGAGGTTAAAGAGATGCCGGTAGTTGTCGTCAATCAGAATAGCAGTATCAACGACGCCATGATGCTCGCCAGTCCTCAAGCCTTACAACCTCTTCAGCCGCCAATATCCCTCCCGCAGCCGCAGGTTCCTGTACCAAATGAAGTGAACCAGTCGACTCAGATGGATGTGGAAATGACTGGAACGCCTGCGCCACCGTCAGCGACGTTGGTCTCAACTATAGACCTTCAACCACCTGATACACCAACAACACATAGAGATATTGCCATTGACTCGAGCGATCTTGGCGTGGAAGAAAATGGAGTCAAAGTCAAATTCGAGACCCTCAGATCAATTGACCAGGTCGACCATATTGACATGGACGCTCATATGACCAACGGGGGGGTCCAGGCAAACGTAGAAGACGACCCGTCGATGCATACCATGATGATCACACCTGAACTTCTCGGGCTCATCCCATCTTCGAATTCTGAGAGCAGCGACATGGACCATTCAAAATCCTCCATGAACGCGGTGAACTCCCTCAATTCCAGCATGTTGTCGTCAGGGGGCAAAACGTGGACGAAAGAAGACATGGACGCGGCGCTGGACGCATTGCGGAAACAGACGATGTCTCTGAGCAAAGCGTCGGCGCATTACGGGATCCCTTCAACAACGCTGTGGCAGAGAGCTCACCGACTGGGAATCGACACGCCGAAGAAAGACGGTCCCGCTAAATCCTGGACGGAAGACAATTTGAACACGGCGCTAGACGCTCTGCGACAAGGGTCCATATCAGCCAACAAGGCCAGCAAAGCGTTCGGAATCCCAAGCAGCACTCTCTATAAAATTGCTCGAAGGGAAGGCATCCGATTGGCAGCCCCTTTCAACGCAGCGCCGACCGCTTGGGTCCCTGAGGACCTTGAGAGAGCTCTGGAGGCGATCCGTTCGGGACAATTTACCGTACAAAGGGCCGCGACGGAGTACGGCATCCCCTCAGGGACGCTCTACGGGAGATGCAAGCGGGAAGGGATTGAACTCTCGAGGAACAATCCGACGCCCTGGTCTGAGGACGCCATGATGGAAGCTTTGGAGGCCGTCAGGATCGGACAAATGAGCATCAACCAAGCGGCCATCCACTACAACCTGCCTTACTCCTCGCTCTACGGCCGATTCAAACGGGTCAAAAACGAAGCTGACGGCCTCTCAGGAAGCGAAACGGACACCTCGGAACAGACGACCGTCCTCGCGCCGTCGCAGCCGCCGGCGCATGCGCACGCCCAACCCCAGATCATGCTCGTCCAATACCAACAACCGCTGCACATGTACCAGTCCGCCACATGA
- Protein Sequence
- MYFGYHSDGGEEGEDMSSQHYCLRWNNYQSNMTSVFHHLLRTQSFVDVTLACNDQSLKAHKVVLSACSSYFQKLLLENPCKHPTIIMPQDVCFTDLKFIIEFVYKGEIDVSQAQLQSLLKTADQLKIKGLCEVPEGKSGAEVTPLPCTPPRKGLSVRRRKLVSAKRRLLYRERLLHKTSSPIANDVSRRALTKKEAETNCMDVATGTEEVKEMPVVVVNQNSSINDAMMLASPQALQPLQPPISLPQPQVPVPNEVNQSTQMDVEMTGTPAPPSATLVSTIDLQPPDTPTTHRDIAIDSSDLGVEENGVKVKFETLRSIDQVDHIDMDAHMTNGGVQANVEDDPSMHTMMITPELLGLIPSSNSESSDMDHSKSSMNAVNSLNSSMLSSGGKTWTKEDMDAALDALRKQTMSLSKASAHYGIPSTTLWQRAHRLGIDTPKKDGPAKSWTEDNLNTALDALRQGSISANKASKAFGIPSSTLYKIARREGIRLAAPFNAAPTAWVPEDLERALEAIRSGQFTVQRAATEYGIPSGTLYGRCKREGIELSRNNPTPWSEDAMMEALEAVRIGQMSINQAAIHYNLPYSSLYGRFKRVKNEADGLSGSETDTSEQTTVLAPSQPPAHAHAQPQIMLVQYQQPLHMYQSAT
Similar Transcription Factors
Sequence clustering based on sequence similarity using MMseqs2
- 100% Identity
- iTF_00930489;
- 90% Identity
- iTF_01365636; iTF_00930489; iTF_00930229; iTF_00145467; iTF_00145740; iTF_00386526; iTF_00386209;
- 80% Identity
- iTF_01365636;