Llin028031.1
Basic Information
- Insect
- Lygus lineolaris
- Gene Symbol
- bab2
- Assembly
- GCA_030264115.1
- Location
- JAEMON010000016.1:4960282-4980995[-]
Transcription Factor Domain
- TF Family
- HTH
- Domain
- HTH_psq domain
- PFAM
- PF05225
- TF Group
- Helix-turn-helix
- Description
- This DNA-binding motif is found in four copies in the pipsqueak protein of Drosophila melanogaster [1]. In pipsqueak this domain binds to GAGA sequence [1].
- Hmmscan Out
-
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc 1 4 4e-13 3.1e-10 40.4 0.0 1 39 386 425 386 429 0.90 2 4 3.2e-12 2.5e-09 37.5 0.0 1 39 440 478 440 481 0.95 3 4 3.9e-17 3e-14 53.2 0.0 2 45 496 540 495 540 0.98 4 4 0.026 20 5.8 0.3 1 14 547 560 547 562 0.92
Sequence Information
- Coding Sequence
- ATGAGCTCGCAGCACTACTGTCTCAGGTGGAATAATTACCAATCAAACATGACGTCAGTTTTCCACCACCTGTTGAGGACGCAGTCTTTCGTCGACGTCACGCTGGCCTGCAACGATCAGTCGCTCAAAGCTCACAAgGTAGTTCTGTCTGCGTGCTCGTCGTACTTCCAGAAACTCCTGCTGGAGAATCCGTGTAAGCATCCCACCATCATCATGCCGCAAGACGTCTGCTTCACGGACCTCAAGTTCATAATCGAATTCGTCTACAAAGGAGAAATTGATGTGTCCCAGGCACAACTCCAAAGCCTTCTCAAAACTGCTGATCAGttgaagatcaaagggcTCTGCGAGGTGCCTGAAGGCAAATCAGGTGCCGAGGTGACCCCATTACCCTGCACGCCGCCAAGGAGGGGGCTGTCGGTGAGACGAAGAAAACTTGCTTCCGCCAAGAGAAGACTTTTGTACAGGGAACGCCTGCTTCACCAAACATCTTCCCACCATGTGCGTGTAAGAAAATTGACCAATGGTATCAGCCGTCGAGTCATCATGAAGAAAGAAGCGGAAACGAACTGCATGGACGTGGCTACTGGAACAGAGGAGGTCAAAGAGATGCCACTAGTCGTCGTCAATCAAAATAACGGGATCAGCGACGCCATGATACTCGCAAGCCCCCAGGCCCTGCCACCCCTTCAACCATCTATAGCCCTCCCGACGTCTCAGcTTCCCGTTCCAAACGAAGTGAACCAATCGACTCAAGTGGAAGTTGAAATGACTGGCACTCCTGCAGCCCCATCCGCAACTTTGGTCACTGGAATGAACCTACAACAGCCTGACACGCCGACTACTCATAGAGATATTGCCATTGACTCGAGCGATCTTGGCGTTGAAGAAAATGGAGTCAAAGTGAAATTCGAGACACTCAGATCTATTGAGCAGGTCGACCACATGGATATGGACGCTCATATGACCAACGGGGCGGTGCAGGCTAACGTGGAAGACGATCCTTCTATGCACACGATGATGATCACTCCGGAACTTCTTGGGCTCATTCCGTCATCTAATTCTGAGAGCAGCGACATGGACCACTCCAAATCCTCCATGAATGCATTGAATGCCATCAACCCCAACACGATGTCGTCTGGCGGTAAAACGTGGACGAAAGAAGACATGGAGGCTGCCCTGGATGCTCTGCGAAAGCAGACAATGTCACTGAGCAAGGCGTCCGCGCATTATGGCATCCCTTCCACCACGTTATGGCAGAGAGCTCATCGATTGGGGATCGACACTCCTAAAAAAGACGGACCAGCGAAATCTTGGACCGAGGACAATTTGAATACGGCACTAGATGCGCTACGACAAGGATCCATATCAGCCAACAAAGCCAGCAAAGCTTTTGGCATTCCAAGCAGCACTCTCTACAAAATTGCACGGAGAGAAGGCATTAGACTGGCTGCACCTTTCAACGCTGCCCCCACATCCTGGGTACCAGAGGATCTCGAGAGAGCGCTGGAGGCGATACGCACGGGACAATTTACTGTTCAACGGGCAGCTACAGAGTATGGTATCCCCTCTGGTACGCTGTACGGGAGGTGCAAGCGGGAAGGCATCGAACTGTCAAGAAACAACCCCACACCTTGGTCCGAGGATGCTATGATGGAAGCGTTGGAAGCTGTGAGATCGGCTGACCGAGCTTCCCCCATGGAGGACCCCTGCGACATCATCGTCATCGAACCGGCCGACTCCTGA
- Protein Sequence
- MSSQHYCLRWNNYQSNMTSVFHHLLRTQSFVDVTLACNDQSLKAHKVVLSACSSYFQKLLLENPCKHPTIIMPQDVCFTDLKFIIEFVYKGEIDVSQAQLQSLLKTADQLKIKGLCEVPEGKSGAEVTPLPCTPPRRGLSVRRRKLASAKRRLLYRERLLHQTSSHHVRVRKLTNGISRRVIMKKEAETNCMDVATGTEEVKEMPLVVVNQNNGISDAMILASPQALPPLQPSIALPTSQLPVPNEVNQSTQVEVEMTGTPAAPSATLVTGMNLQQPDTPTTHRDIAIDSSDLGVEENGVKVKFETLRSIEQVDHMDMDAHMTNGAVQANVEDDPSMHTMMITPELLGLIPSSNSESSDMDHSKSSMNALNAINPNTMSSGGKTWTKEDMEAALDALRKQTMSLSKASAHYGIPSTTLWQRAHRLGIDTPKKDGPAKSWTEDNLNTALDALRQGSISANKASKAFGIPSSTLYKIARREGIRLAAPFNAAPTSWVPEDLERALEAIRTGQFTVQRAATEYGIPSGTLYGRCKREGIELSRNNPTPWSEDAMMEALEAVRSADRASPMEDPCDIIVIEPADS
Similar Transcription Factors
Sequence clustering based on sequence similarity using MMseqs2
- 100% Identity
- iTF_00930489;
- 90% Identity
- iTF_01365317;
- 80% Identity
- iTF_00930489;