Aluc003736.1
Basic Information
- Insect
- Apolygus lucorum
- Gene Symbol
- bab2
- Assembly
- GCA_009739505.2
- Location
- CM019169.2:27025878-27052533[-]
Transcription Factor Domain
- TF Family
- HTH
- Domain
- HTH_psq domain
- PFAM
- PF05225
- TF Group
- Helix-turn-helix
- Description
- This DNA-binding motif is found in four copies in the pipsqueak protein of Drosophila melanogaster [1]. In pipsqueak this domain binds to GAGA sequence [1].
- Hmmscan Out
-
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc 1 4 1.8e-13 8.4e-11 41.5 0.0 1 39 398 437 398 441 0.90 2 4 3.8e-12 1.8e-09 37.3 0.0 1 39 452 490 452 493 0.95 3 4 2.2e-17 1e-14 54.1 0.0 2 45 508 552 507 552 0.98 4 4 4.4e-18 2.1e-15 56.3 0.1 1 43 559 602 559 603 0.96
Sequence Information
- Coding Sequence
- ATGATGTATTACGGGTACCACAGCGAAGGAGGTGAGGAGGGGGAGGACATGAGCTCGCAGCACTACTGCCTCAGGTGGAACAATTACCAATCAAACATGACGTCAGTGTTCCACCACTTGTTGAGGACGCAGTCTTTCGTCGACGTCACGCTGGCCTGCAACGACCAGTCACTCAAAGCCCACAAGGTTGTTCTATCAGCGTGCTCGTCGTACTTCCAGAAACTCCTGTTGGAAAATCCATGCAAGCATCCCACCATCATCATGCCGCAAGACGTCTGCTTCACAGACCTCAAGTTCATAATCGAATTCGTTTACAAAGGAGAAATCGATGTGTCCCAGGCACAACTTCAAAGCCTCCTTAAAACGGCTGATCAGTTGAAGATCAAAGGTCTCTGCGAGGTGCCTGAGGGCAAATCAGGTGCTGAGGTGACGCCATTACCCTGCACACCGCCCAGGAGGGGACTTTCtgtgaggagaagaaaactCGCTTCCGCCAAGAGAAGACTTCTCTACAGGGAACGCCTTCTTCACCAAACATCTTCCCACCATGTGCGTaccAATAGTATCAGCCGGCGAATCATCATGAAGAAAGAGGCTGAAACGAACTGCATGGACGTGGCTACTGGGACAGAGGAAGTAAAGGAGATGCCGCTCGTCGTTGTCAACCAAAATAatggaatcagcgacgccatgATACTCGCCAGCCCTCAGGCGCTACCACCTTTGCAACCACCAATAGCCCTCCCACCTTCACAGcttcctgttCCAAACGAAGTGAACCAATCGACTCAAGTGGAAGTGGAAATGACTGGCACTCCTGCAGCTCCATCTGCGACTTTGGTCACTGGAATGAACCTTCAACAACCAGACACGCCGACGACACATAGAGATATTGCCATTGACTCCAGCGATCTTGGTGTTGAAGAAAACGGGGTTAAAgtcaaattcgaaacgctcagaTCGATTGAACAGGTCGACCACATGGACATGGACGCTCATATGACCAACGGGGCGGTGCAGGCTGACGTTGAAGACGATCCTTCTATGCACACGATGATGATCACTCCGGAACTTCTTGGGCTCATTCCTTCCTCCAATTCTGAGAGCAGCGATATGGATCACTCCAAGTCTTCCATGAATGCGTTGAACGCCCTTAATCCCAACACGATGTCGTCTGGTGGTAAAACGTGGACGAAAGAAGACATGGAGGCTGCCCTGGAAGCTCTTCGGAAGCAGACGATGTCACTGAGCAAGGCGTCAGCGCACTACGGCATCCCCTCTACCACTCTGTGGCAGAGAGCTCATCGGTTGGGGATAGACACACCTAAAAAAGATGGACCAGCGAAATCGTGGACTGAAGACAATTTGAATACGGCTCTCGACGCGCTACGACAAGGATCCATTTCAGCCAACAAGGCCAGCAAAGCATTTGGCATTCCAAGCAGCACTCTCTACAAAATTGCTCGAAGAGAAGGCATAAGACTGGCTGCACCTTTCAACGCTGCCCCGACATCGTGGGTTCCAGAAGATCTTGAGAGAGCGCTGGAAGCGATACGTTCAGGACAGTTCACTGTACAGCGGGCAGCAACAGAGTATGGGATCCCTTCTGGCACACTGTATGGTAGGTGCAAGCGGGAAGGTATCGAGCTGTCGAGGAACAACCCCACGCCTTGGTCTGAGGACGCCATGATGGAAGCATTGGAAGCTGTGAGGATTGGCCAAATGAGCATCAACCAAGCAGCTATCCACTACAACCTGCCTTACTCCTCCCTCTATGGGCGGTTCAAACGCGTCAAATACGAAGCTGACGGCCTCTCTGGGAGCGAGACGGACAACTCGGAACAGACGACGGTCCTTCAACCTACGCAGCCACCTGCGCACGCGCATGCGCACTCCCAACCTCAAATCATGCTCGTCCAATACCAACAGCCGCTCCACATGTACCAGTCCGCCACATGA
- Protein Sequence
- MMYYGYHSEGGEEGEDMSSQHYCLRWNNYQSNMTSVFHHLLRTQSFVDVTLACNDQSLKAHKVVLSACSSYFQKLLLENPCKHPTIIMPQDVCFTDLKFIIEFVYKGEIDVSQAQLQSLLKTADQLKIKGLCEVPEGKSGAEVTPLPCTPPRRGLSVRRRKLASAKRRLLYRERLLHQTSSHHVRTNSISRRIIMKKEAETNCMDVATGTEEVKEMPLVVVNQNNGISDAMILASPQALPPLQPPIALPPSQLPVPNEVNQSTQVEVEMTGTPAAPSATLVTGMNLQQPDTPTTHRDIAIDSSDLGVEENGVKVKFETLRSIEQVDHMDMDAHMTNGAVQADVEDDPSMHTMMITPELLGLIPSSNSESSDMDHSKSSMNALNALNPNTMSSGGKTWTKEDMEAALEALRKQTMSLSKASAHYGIPSTTLWQRAHRLGIDTPKKDGPAKSWTEDNLNTALDALRQGSISANKASKAFGIPSSTLYKIARREGIRLAAPFNAAPTSWVPEDLERALEAIRSGQFTVQRAATEYGIPSGTLYGRCKREGIELSRNNPTPWSEDAMMEALEAVRIGQMSINQAAIHYNLPYSSLYGRFKRVKYEADGLSGSETDNSEQTTVLQPTQPPAHAHAHSQPQIMLVQYQQPLHMYQSAT
Similar Transcription Factors
Sequence clustering based on sequence similarity using MMseqs2
- 100% Identity
- iTF_00930489;
- 90% Identity
- iTF_01365317;
- 80% Identity
- iTF_00145740;