Smar013870.1
Basic Information
- Insect
- Sphenella marginata
- Gene Symbol
- MBD2
- Assembly
- GCA_951509765.1
- Location
- OX608079.1:14650406-14652955[+]
Transcription Factor Domain
- TF Family
- MBD
- Domain
- MBD domain
- PFAM
- PF01429
- TF Group
- Unclassified Structure
- Description
- The Methyl-CpG binding domain (MBD) binds to DNA that contains one or more symmetrically methylated CpGs [2]. DNA methylation in animals is associated with alterations in chromatin structure and silencing of gene expression. MBD has negligible non-specific affinity for DNA. In vitro foot-printing with MeCP2 showed the MBD can protect a 12 nucleotide region surrounding a methyl CpG pair [2]. MBDs are found in several Methyl-CpG binding proteins and also DNA demethylase [1].
- Hmmscan Out
-
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc 1 2 8.9e-28 7.9e-24 84.6 0.0 1 73 7 74 7 78 0.95 2 2 0.00073 6.4 8.0 0.0 29 72 229 283 194 288 0.81
Sequence Information
- Coding Sequence
- ATGAGCTCTAGTATAACAATTGAACGGAAGCGTGTTGATTGTAATGCACTACCAAAAGGCTGGCAGCGCGAGGAGGTGTTACGCAAATCTGGAATATCTGCTGGTAAAGTAGATGTTTACTATTACAGTCCGACTGgtaaaaaaatcgaaagtaaACCACAATTGGCACGTTACCTTGGCGATGCCATCGATATTGGTGCATTCGATTTTCATAGCGGAAAGTTTGTGCGTCACTTGCCTCCGCCATCGATTTCTCTATTCCGCTGTAGCAGTTTAACCGGCAATAACAGCAGCAACTGTGGTGTTGGTGGAAGTGACAGCACATCAATGCCACCACCGCCTCCACAATGCAGTAGCGGTGTAATTACATTATCCCAATCCGTATGTTCCTCTCCAAGTAGTAATGCACAATTACCTAGCACTACGAACGCCAACATACTACAATCGCCAACGTCGTCTTCAACATCAAGTGCATCAGCAAATACATTAAAGCGCAAATATAagtctcaatcccaatcccaaataCAAAATCAGAATCAATCACAAACCCACCATCACCAGGTACAAGGCATACAAAAAAATGCCAATAGTAGCAGTTGTTCCCCAACAAGCTCATCTGGTGCTGGTGCTACTGCAACTTCATCGACAGCAATTTCACGTCAGCAATTAGAATTCAGTCGAACGCCACGCACAGACGCCTCTTTGGTGCCACCTATACGACAAACTGCATCAATTTTTAAACAGCCAGTTACAGTTGTTCGCAATCATGAGCATACAAAAGTGCGTAATGACAATACCAAACAGCAGAGTGGTCAAGAAAAACCGAAACAAATGTTTTGGGAAAAACGTTTAGAAGGTTTGCGCGCTTGCCATCCCACTGGTGAAGAATTTGACGACATTGTTCTACCTAAAAGTATACGCGCCATTGGACCCAATGTAAATGAGCAAACTGTGCTTCAATCATTAGCTACAGCGTTGCATGTACTCAATGTGCCGGTAATGGGCCAGGCTTCCACAAAGACTGAGATGAATAAGAATGCAACGGCATTTTTAAACCCCGAGCAGCCGCTTATGCAGGCTGTGTTAGTGTCAGATGACGATATTCGTCGACAAGAGGATCGTGTTAATGCAGCTCGAAAAAAGTTACAGGATGCACTCAAAGCATAG
- Protein Sequence
- MSSSITIERKRVDCNALPKGWQREEVLRKSGISAGKVDVYYYSPTGKKIESKPQLARYLGDAIDIGAFDFHSGKFVRHLPPPSISLFRCSSLTGNNSSNCGVGGSDSTSMPPPPPQCSSGVITLSQSVCSSPSSNAQLPSTTNANILQSPTSSSTSSASANTLKRKYKSQSQSQIQNQNQSQTHHHQVQGIQKNANSSSCSPTSSSGAGATATSSTAISRQQLEFSRTPRTDASLVPPIRQTASIFKQPVTVVRNHEHTKVRNDNTKQQSGQEKPKQMFWEKRLEGLRACHPTGEEFDDIVLPKSIRAIGPNVNEQTVLQSLATALHVLNVPVMGQASTKTEMNKNATAFLNPEQPLMQAVLVSDDDIRRQEDRVNAARKKLQDALKA
Similar Transcription Factors
Sequence clustering based on sequence similarity using MMseqs2
- 100% Identity
- iTF_01045464;
- 90% Identity
- iTF_00992594;
- 80% Identity
- -