Mwes001476.1
Basic Information
- Insect
- Merzomyia westermanni
- Gene Symbol
- MBD2_1
- Assembly
- GCA_949987695.1
- Location
- OX465288.1:41724307-41728651[-]
Transcription Factor Domain
- TF Family
- MBD
- Domain
- MBD domain
- PFAM
- PF01429
- TF Group
- Unclassified Structure
- Description
- The Methyl-CpG binding domain (MBD) binds to DNA that contains one or more symmetrically methylated CpGs [2]. DNA methylation in animals is associated with alterations in chromatin structure and silencing of gene expression. MBD has negligible non-specific affinity for DNA. In vitro foot-printing with MeCP2 showed the MBD can protect a 12 nucleotide region surrounding a methyl CpG pair [2]. MBDs are found in several Methyl-CpG binding proteins and also DNA demethylase [1].
- Hmmscan Out
-
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc 1 3 8.8e-28 8.5e-24 84.6 0.0 1 73 7 74 7 78 0.95 2 3 0.00073 7 8.0 0.0 29 72 227 281 192 286 0.82 3 3 2.2 2.1e+04 -3.2 0.0 36 45 288 297 288 299 0.80
Sequence Information
- Coding Sequence
- atGAGCTCTAGTATAACAATTGAACGGAAGCGTGTGGATTGCAATGCATTACCAAAAGGTTGGCAGCGCGAGGAGGTGCTGCGAAAATCTGGAATATCTGCTGGTAAAGTCGATGTTTACTATTACAGTCCGActggtaaaaaaatcgaaagtaaaCCACAATTGGCACGTTACCTTGGCGATGCCATCGATATTGGTGCATTCGATTTTCATAGCGGCAAGTTTGTGCGTCACTTGCCTTCACCATCCATTTCTCTATTCCGCTGTAGCAGTTTATATGGCAATAACAGCAGCAACTGTGGTGTTGGTGTAAGTGACAGCACATCAATGCCACCACCGCCGCCACAATGTAGTAGCGGTGGAATTACATCATCCCAATCCGTATGTTCCTCTCCAAGTAGTAATGCACAATTACCTAGCACTACGAATGCCAACATACTACAATCAGAAACGTCGTCTACAACATCAAGTGCATCAGCAAATACATTAAAGCGCAAATATAAGTCGCAATCCCAATTACAAAATCAGAATCAATCACAGACCCACCATCACCAGGTACAAGGCATACAAAAAAATGCCAATAGTAGCAGTTGTTCCCCAACAAGCTCATCTGGTGCTGGTGCTGCTGCAAGTACATCGACAGCCATTTCACGTCAGCAATTAGAATTCAGTCGGACGCCACGTACAGACGCCTCTTTGGTGCCACCTATAAGACAAACTGCATCCATTTTTAAACAACCAGTTACAGTTGTTCGCAATCATGAACATACAAAAGTGCGCAATGATAATACAAAACAGCCAAGTGGCcaagaaaaaccaaaacaaatgtTCTGGGAAAAACGTTTGGAAGGTTTGCGCGCTTGCCATCCTACCGGTGAAGAATTCGAAGACATTGTTCTGCCTAAAAGTATACGCGCCATTGGACCAAATGTAAATGACCAAACTGTGCTGCAATCATTAGCTACGGCTTTGCATGTACTCAATGTGCCGGTAATGGGCCAGGCTTCCACAAAGACTGAGATGAATAAGAATGCAACGGCATTTTTAAACCCCGAGCAGCCGCTTATGCAGGCTGTGTTAGTGTCAGATGACGATATTCGTCGACAAGAGGATCGTGTTAATGCTGCTCGAAAAAAGTTACAGGATGCACTCAAAGCATAG
- Protein Sequence
- MSSSITIERKRVDCNALPKGWQREEVLRKSGISAGKVDVYYYSPTGKKIESKPQLARYLGDAIDIGAFDFHSGKFVRHLPSPSISLFRCSSLYGNNSSNCGVGVSDSTSMPPPPPQCSSGGITSSQSVCSSPSSNAQLPSTTNANILQSETSSTTSSASANTLKRKYKSQSQLQNQNQSQTHHHQVQGIQKNANSSSCSPTSSSGAGAAASTSTAISRQQLEFSRTPRTDASLVPPIRQTASIFKQPVTVVRNHEHTKVRNDNTKQPSGQEKPKQMFWEKRLEGLRACHPTGEEFEDIVLPKSIRAIGPNVNDQTVLQSLATALHVLNVPVMGQASTKTEMNKNATAFLNPEQPLMQAVLVSDDDIRRQEDRVNAARKKLQDALKA
Similar Transcription Factors
Sequence clustering based on sequence similarity using MMseqs2
- 100% Identity
- iTF_01045464;
- 90% Identity
- iTF_01357949;
- 80% Identity
- -