Sate013009.1


Basic Information
Transcription Factor Domain
Sequence Information
Similer Transcription Factors

Basic Information

Insect
Smittia aterrima
Gene Symbol
Hr39
Assembly
GCA_033063855.1
Location
CP093831.1:18324627-18326991[-]

Transcription Factor Domain

TF Family
SF-like
Domain
zf-C4|SF-like
PFAM
AnimalTFDB
TF Group
Zinc-Coordinating Group
Description
The ligand binding domain of nuclear receptor steroidogenic factor 1 (SF-1): SF-1, a member of the nuclear hormone receptor superfamily, is an essential regulator of endocrine development and function and is considered a master regulator of reproduction. Most nuclear receptors function as homodimer or heterodimers, however SF-1 binds to its target genes as a monomer, recognizing the variations of the DNA sequence motif, T/CCA AGGTCA. SF-1 functions cooperatively with other transcription factors to modulate gene expression. Phospholipids have been determined as potential ligands of SF-1. Like other members of the nuclear receptor (NR) superfamily of ligand-activated transcription factors, SF-1 has a central well conserved DNA binding domain (DBD), a variable N-terminal domain, a flexible hinge and a C-terminal ligand binding domain (LBD). [1, 8, 3, 11, 6, 5, 12, 10, 9, 2, 4, 7]
Hmmscan Out
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc
1 4 0.17 1.5e+03 -1.8 6.8 76 155 132 246 73 277 0.50
2 4 2.4e-09 2.1e-05 24.1 0.0 1 30 373 402 373 412 0.91
3 4 0.004 35 3.6 0.0 86 129 422 463 406 485 0.76
4 4 1.6e-75 1.4e-71 242.1 0.0 203 408 489 690 474 690 0.96

Sequence Information

Coding Sequence
ATGTCAAATATATCGGTGACGAGTATCAACTCACCAAGCGAGCTGAGTGGAAATGTGAGAGAACAGGCGCCTTTAGATGGTAGCAATGTGAGAATCACGATTCCTAAGATCGAAGACACTTCGGAGAACTCGGATAGCGAGCTCGAGTTGTCAAATATTGAGAAGACTGCAATATGCAATGTAAAAAATAATGGACAGCGGCCGATGTCATGGGAAGGCGAGTTGTCAGAAAATGAGGAGATGATGGAGGTAGAGAAATCGAGTCCGGTACAGATGGAGTTTGAGCAAAAAACGACAATCAAGCCGGAAGTGATTTCGCCGACTGAAAACATGACGAACAATAACCCCAGCACTATACAGCAACTTAAAGTGCCAGCATTTTCATCGAtgacaacaaagaaattccCCGatatcataaatttaaaattcgaGCCGGGCACGTCAGGCAGCGCTTATCAAGAAGCACTTCTTAATAACAGTCCCCTACTTGTAAGGTCAAAGCAGCAATCTCTGCTACCGGCAAATCCTAGCCCTGATTCAGCAATCCATTCAATTTACACTCAAAGTTCGCCAAGCCAATCGCCATTGACTTCAAGACACGCTCCATACACGCCATCACTGAGCCGTAACAACAGCGATGCTTCTCACAGCTCGTGTTACTCGTATAGTTCTGAATTCAATAGCCCAACGCATTCACCAATCCAAGGTCGACATTCAATTTATGCACCTTCGACATCACAACAACAATTCAATGGCGGCGGCTTGCATCACTCGATGCTTTATAGACCGCTCATCGATGGAGagcaacaaagtttcagAGTCGGAACAAATGAAGAGAACAATAATGATCAACAAGATACTGGAATTCCAACGGCTGGAATTTCAAGACAACAATTAATCAACAGTCCATGTCCAATATGCTCTGATAAGATTTCGGGTTTCCACTATGGAATATTCTCATGCGAATCATGTAAAGGATTTTTCAAACGCACCGTTCAAAATCGGAAGAATTATGTTTGCCTGCGAGGCGCAGCTTGTCCGGTAACGATTGCTACAAGAAAGAAGTGTCCAGCTTGTCGATTCGAGAAGTGTCTTCAGAAAGGAATGAAACTCGAAGCTATTCGTGAGGATCGCACAAGAGGAGGACGATCGACTTATCAGTGCTCTTACACACTTCCCGTCTCTTCGCTCTCACAGCATCAATCAATTGGTCCAGATGGACATTATAAGCTAAATGGGAACAATTTGAATGATGGCAAGTCAATGAATGGTTCGGGAGATCAAGTTATGAAGCCTGGAGTTCCGACTCTTTTACAAGAAATCATGGACGTTGAGTATTTATGGCAATACAATGAGAGTGAGTTAACTCGTCTTAACCAGCCAACAACAAGCATTGACGATCATCAAACATCATCCGAagcaatcaaaaataatcCATTCCTAGCAAGTGCTGGAGTAACAAATGACAATTCTAATCCTGACTTGATTGCAACTCTCTGCAAGATCGCCGACCATAGACTTTACAAAATTGTTAAGTGGTGCAAGTCATTGCCGCTTTTTAAAAACATATCAATTGACGATCAAATTTGCCTACTCATCAATTCTTGGTGTGagcttcttttattttcctgcTGCTTCCGATCCATAACAACTCCTGgtgagattaaaatttcccTCGGAAAGTCAATAACGCTAGCTCAAGCGAAGCTCAGTGGACTACATGTTTGCATTGAGCGAATGCTCAATCTAACGGATCACTTACGTCGATTGAAAGTCGATAAGTATGAGTACGTGGCCATGAAAGTGATAGTCTTGCTTTCGTCAgACACTGCTGAGTTAAAGGAGCCAGAGAAGGTTAGAGCGAGTCAAGAGAAAGCTTTACAAGCTCTGCAAGCTTATACTTTAGGACATTATCCAGATTCACCTGCTAAGTTTGGTGAACTCTTGTTGAGAATTCCAGAACTTCAAAGAACGTGTCAGGTcggaaaagaaatgttaaCAATCAAGCCTAAGGATGGCGAAGACGAGCCATCTTTCAATCTACTAATGGAACTGCTTAGAGGCGAACATTAA
Protein Sequence
MSNISVTSINSPSELSGNVREQAPLDGSNVRITIPKIEDTSENSDSELELSNIEKTAICNVKNNGQRPMSWEGELSENEEMMEVEKSSPVQMEFEQKTTIKPEVISPTENMTNNNPSTIQQLKVPAFSSMTTKKFPDIINLKFEPGTSGSAYQEALLNNSPLLVRSKQQSLLPANPSPDSAIHSIYTQSSPSQSPLTSRHAPYTPSLSRNNSDASHSSCYSYSSEFNSPTHSPIQGRHSIYAPSTSQQQFNGGGLHHSMLYRPLIDGEQQSFRVGTNEENNNDQQDTGIPTAGISRQQLINSPCPICSDKISGFHYGIFSCESCKGFFKRTVQNRKNYVCLRGAACPVTIATRKKCPACRFEKCLQKGMKLEAIREDRTRGGRSTYQCSYTLPVSSLSQHQSIGPDGHYKLNGNNLNDGKSMNGSGDQVMKPGVPTLLQEIMDVEYLWQYNESELTRLNQPTTSIDDHQTSSEAIKNNPFLASAGVTNDNSNPDLIATLCKIADHRLYKIVKWCKSLPLFKNISIDDQICLLINSWCELLLFSCCFRSITTPGEIKISLGKSITLAQAKLSGLHVCIERMLNLTDHLRRLKVDKYEYVAMKVIVLLSSDTAELKEPEKVRASQEKALQALQAYTLGHYPDSPAKFGELLLRIPELQRTCQVGKEMLTIKPKDGEDEPSFNLLMELLRGEH