Cmar012449.1
Basic Information
- Insect
- Clunio marinus
- Gene Symbol
- Hr39
- Assembly
- GCA_900005825.1
- Location
- CVRI01000044.1:1254533-1261064[+]
Transcription Factor Domain
- TF Family
- SF-like
- Domain
- zf-C4|SF-like
- PFAM
- AnimalTFDB
- TF Group
- Zinc-Coordinating Group
- Description
- The ligand binding domain of nuclear receptor steroidogenic factor 1 (SF-1): SF-1, a member of the nuclear hormone receptor superfamily, is an essential regulator of endocrine development and function and is considered a master regulator of reproduction. Most nuclear receptors function as homodimer or heterodimers, however SF-1 binds to its target genes as a monomer, recognizing the variations of the DNA sequence motif, T/CCA AGGTCA. SF-1 functions cooperatively with other transcription factors to modulate gene expression. Phospholipids have been determined as potential ligands of SF-1. Like other members of the nuclear receptor (NR) superfamily of ligand-activated transcription factors, SF-1 has a central well conserved DNA binding domain (DBD), a variable N-terminal domain, a flexible hinge and a C-terminal ligand binding domain (LBD). [1, 8, 3, 11, 6, 5, 12, 10, 9, 2, 4, 7]
- Hmmscan Out
-
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc 1 3 0.023 2.4e+02 1.1 3.3 32 150 153 240 67 303 0.59 2 3 3.8e-10 4.1e-06 26.7 0.4 1 91 375 480 375 486 0.70 3 3 1.1e-75 1.2e-71 242.6 0.1 202 408 496 698 474 698 0.94
Sequence Information
- Coding Sequence
- atgtCGAACACGAATATATCAGTAACAAACATCAATTGCCCTAGTGAATCATCGGAAAATATTGTGGGTGAACAGGCGTCGATAGATGGCAATGTACGCATCACAATACCGAAAATTGAAGATAATTCGGACAATTCAGATAGTGAATTGGAGTTGTCGAATATTGAAAAGACTGCAACCTGCAATGTAAAGAGTAGCAATGGACAAAGGCCAATGTCATGGGAAGGAGAATTATCggagaatgaagaaatgatGGAAGTTGAGAAATCAAGTCCGGTTGAGATGGCTGAGATAAAGCCGGAAGTGATTACACCAACTGAGAACAtcacaaataataatttaaatatagtTCAGCAACTTAAAGTGCCAGCTTTTAGTTCGGTGACGACAAAAAAGTTTCCTGACATTGTCAATTTGAAATTCGAGCCTGGAGTAGCTGGAAGTAGTGCGTATCAAGAGGCTCTCATTCAGAACAGTCCATTGCTTGTACGATCAAAACAACAATCACTTTTGCCTGCAAATCCAAGTCCTGATTCTGCTATTCATTCGATTTACACTCAAAGCTCACCGAGCCAATCGCCATTGACATCACGACATGCTCCATACACGCCTTCATTAAGTCGCAATAATAGTGACGCTTCACATAGCTCATGTTACTCGTACAGTTCTGAATTTAATAGTCCAACGCACTCACCTATACAAGGTCGACATTTGATCTATGCTCAAGTGCCACCACCATCGTCATCACAACAATTCAATGGAACATTGCATCACTCAATGCTTTATCGACCTCTAATTGATGGCGAACAACAAAACTTTCGTCTGGGTACGactgaagaaaataataatgatcAACAAGATCCTGGAATACCAACAACAGCTGGAATTTCACGACAACAACTCATCAACAGTCCATGTCCAATTTGTTCTGATAAAATTTCTGGTTTCCATTATGGAATCTTTTCCTGTGAGTCGTGTAAAGGATTTTTCAAACGTACAGTGCAGAATCGAAAGAATTATGTTTGTTTACGTGGTGCAGCATGTCCAGTAACGATAgcaacaagaaagaaatgtcCAGCCTGTCGTTTTGAAAAATGTCTTCAAAAAGGAATGAAACTTGAAGCAATTCGTGAAGATCGTACGAGAGGTGGGCGATCAACGTATCAATGTTCTTATACACTTCCAGTGACATCACTTCCACATCAACAAACTATGGGAATGGATGgacaatttaaaatgaatggaaataatGTGAAAAGTGAAGGCGGTGAAAACAGAGCAATAAATGGCACAAGTGAACATGTCATGAAACCAGGCGTGCCAGCATTACTTCAGGAAATTATGgatgttgaatatttatggCAATATAATGAAAGTGAATTGACGAGACTCAATCAACCGACAACAAGTTGCTCCAGTGATCAACAtcaatcatcatcagatgCGATTAAAAATAATCCGTTCCTTGCAAGTGCCGGTGTCACGAACGATAATTCAAATCCCGATATGATTGCAACACTTTGTAAAATTGCTGATCATCGGCTTTATAAGATTGTGAAATGGTGCAAATCGCTACcgttatttaaaaatatttcgATTGACGATCAAATCTGCCTGCTTATAAACTCTTGGTGTgaacttttgttgttttcatgttGCTTTCGATCCATCACAACACCGGgtgagattaaaatttcacttggAAAATCGATAACTCTTGCACAGGCAAAACTAAGTGGACTTCATGTTTGCATTGAACGAATGCTCAATCTAACGGATCATTTACGTCGATTGAAAGTCGATAAATATGAATATGTAGCCATGAAAGTGATAGTTTTATTGTCATCAGACACAGCTGAACTTAAAGAACCAGAAAAAGTGAGGGCAAGTCAAGAGAAGGCACTTCAAGCGTTGCAAGCTTACACTTTAGGTCATTATCCTGATTCACCAGCAAAGTTTGGAGAACTTTTGTTGAGGATTCCTGAGCTTCAAAGAACGTGTCAGGTGGGGAAAGAAATGTTAACAATCAAGCCTAAAGACGGTGAAGATGAACCTTCATTTAACTTACTTATGGAACTTCTTCGAGGTGAACACTAA
- Protein Sequence
- MSNTNISVTNINCPSESSENIVGEQASIDGNVRITIPKIEDNSDNSDSELELSNIEKTATCNVKSSNGQRPMSWEGELSENEEMMEVEKSSPVEMAEIKPEVITPTENITNNNLNIVQQLKVPAFSSVTTKKFPDIVNLKFEPGVAGSSAYQEALIQNSPLLVRSKQQSLLPANPSPDSAIHSIYTQSSPSQSPLTSRHAPYTPSLSRNNSDASHSSCYSYSSEFNSPTHSPIQGRHLIYAQVPPPSSSQQFNGTLHHSMLYRPLIDGEQQNFRLGTTEENNNDQQDPGIPTTAGISRQQLINSPCPICSDKISGFHYGIFSCESCKGFFKRTVQNRKNYVCLRGAACPVTIATRKKCPACRFEKCLQKGMKLEAIREDRTRGGRSTYQCSYTLPVTSLPHQQTMGMDGQFKMNGNNVKSEGGENRAINGTSEHVMKPGVPALLQEIMDVEYLWQYNESELTRLNQPTTSCSSDQHQSSSDAIKNNPFLASAGVTNDNSNPDMIATLCKIADHRLYKIVKWCKSLPLFKNISIDDQICLLINSWCELLLFSCCFRSITTPGEIKISLGKSITLAQAKLSGLHVCIERMLNLTDHLRRLKVDKYEYVAMKVIVLLSSDTAELKEPEKVRASQEKALQALQAYTLGHYPDSPAKFGELLLRIPELQRTCQVGKEMLTIKPKDGEDEPSFNLLMELLRGEH
Similar Transcription Factors
Sequence clustering based on sequence similarity using MMseqs2
- 100% Identity
- iTF_01352696;
- 90% Identity
- iTF_00346789;
- 80% Identity
- iTF_00346789;