Basic Information

Insect: Sitophilus oryzae
Gene Symbol: -
Assembly: GCA_002938485.2
Location: NW:1840846-1857156[+]

Transcription Factor Domain

TF Family: zf-C2H2
Domain: zf-C2H2 domain
PFAM: PF00096
TF Group: Zinc-Coordinating Group
Description: The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
Hmmscan Out: # of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc

1 11 0.0003 0.015 15.4 5.2 1 23 210 232 210 232 0.97

2 11 1.4e-05 0.00074 19.5 1.5 1 23 238 260 238 260 0.98

3 11 6.6e-05 0.0034 17.4 0.5 1 23 266 289 266 289 0.95

4 11 0.0069 0.36 11.1 3.5 1 21 295 315 295 317 0.95

5 11 0.00014 0.0074 16.4 1.9 1 23 323 345 323 345 0.99

6 11 2.9e-05 0.0015 18.6 0.9 1 23 351 373 351 373 0.98

7 11 0.00093 0.049 13.8 1.2 1 23 381 404 381 404 0.97

8 11 0.00029 0.015 15.4 2.3 2 23 411 432 410 432 0.96

9 11 6.3e-05 0.0033 17.5 0.5 1 23 438 460 438 460 0.98

10 11 1e-05 0.00053 20.0 3.3 1 23 466 489 466 489 0.96

11 11 6e-07 3.1e-05 23.9 1.9 1 23 503 525 503 525 0.96

#	of	c-Evalue	i-Evalue	score	bias	hmm coord from	hmm coord to	ali coord from	ali coord to	env coord from	env coord to	acc
1	11	0.0003	0.015	15.4	5.2	1	23	210	232	210	232	0.97
2	11	1.4e-05	0.00074	19.5	1.5	1	23	238	260	238	260	0.98
3	11	6.6e-05	0.0034	17.4	0.5	1	23	266	289	266	289	0.95
4	11	0.0069	0.36	11.1	3.5	1	21	295	315	295	317	0.95
5	11	0.00014	0.0074	16.4	1.9	1	23	323	345	323	345	0.99
6	11	2.9e-05	0.0015	18.6	0.9	1	23	351	373	351	373	0.98
7	11	0.00093	0.049	13.8	1.2	1	23	381	404	381	404	0.97
8	11	0.00029	0.015	15.4	2.3	2	23	411	432	410	432	0.96
9	11	6.3e-05	0.0033	17.5	0.5	1	23	438	460	438	460	0.98
10	11	1e-05	0.00053	20.0	3.3	1	23	466	489	466	489	0.96
11	11	6e-07	3.1e-05	23.9	1.9	1	23	503	525	503	525	0.96

Sequence Information

Coding Sequence: ATGACTACAAATACACAATTCGACGAGACGACAATTAAAATAGAAGACACCTCGGAAAATGTTACCGAGATCCAGTCCTATTTGGCTGGCTTccaaaaagaaatcggcgataataACATACAAACAAACTCAGgAGGTGaggaaaatgaaaatgaaacaGAGGAAGGTACTTACTTTGTCGATCAAGCCGGTCACTACTATTTTCAAGCCAAGGGAGATGCGCAGCCAGTCATGACGGTTATGTCAGCCTTACCACAACAGGCTGCATCGGATGAAGGGGACGAGTACATTATTAACGCTGACAATGAGGAGAATGAGACCAATGATGACCAAGAAGAGcgTGGACCTAGCAacgaaaatcaaattttaataaactcAGGCAACGCTTTCCAAAGAGTGACTGTAGTTCCTGCCGATAACAATTCTGGCGAACTCAGTTACGTTCTCATCGTTCAAGATCCTGATTTGAAAGACAATGATAATGATGAGGATGAGGATGATCAGGATATGGCAGtttacgattttGACGATCAAGATGGCAGCGTTCAAATGGACTCAGACGCCGAGGACGACAAATCAAAAATCGTCAAAGTGTTCCCGAGAAAATCACAGAGCGTGTCACAAGCTCACATGTGTAACTACTGTAATTATACCAGTTCCAAAAGGTACCTGTTATCCAGGCATATGAAATCCCATTCAGAAGAACGGCCTCACAAGTGCAGCGTATGTGAACGGGGTTTTAAAACCCTGGCTTCCCTGCAAAATCACGTGAACACTCACACAGGAACCAAACCGCACGCTTGCTCCTATTGCGAGGCCGCGTTCACTACATCAGGTGAATTGGTGCGTCACGTGAGATACCGTCACACTCACGAGAAGCCTCACAAGTGTTCGGACTGTGACTACGCCAGCGTAGAGCTGTCAAAGTTGAAACGTCACATCCGGTGTCACACTGGCGAAAGACCATACCAATGCCCGCACTGTACCTACGCCAGTCCCGACACGTTTAAACTGAAGAGGCATCTGAGGATTCATACAGGGGAGAAACCTTACGTTTGTGACATTTGCAGTAATAGGTTTACTCAGAGTAACAGTTTGAAGGCTCACAAGCTCACACATAACAtcgGTGACAAACCAATATTTCAATGCGCCCTCTGTCCGACAACTTGTGGCAGAAAAACCGACTTAAGAATTCACGTTCAGAAGCTACATACATCGGATAAACCACTAAAATGCAGAAGATGTGGCAAATCCTTTCCAGACAGATACAGCTACAAGCTACACAATAAATCTCACGAAGGCGAAAAATGCTTTAAGTGTGACCTGTGTCCCTACGCTTCCACATCGGCCAGGCATCTAGAATCACACATGCTGATTCACACGGATCAAAAACCATACGAATGTGATTTGTGTGATCATTCCTTTAGACAAAAACAATTATTGAGGAGACATCAAAATCTATATCACAACCCTGAATATATTCCACCAAAGCCTAGAGATAAAACTCACGAGTGTCCCGAGTGTTCGCGAACGTTCACTCACAAAGgaaATTTACTTAGGCATATGGCAGCTCACGATCCTGATCCACAGATTCAACAGAAACAACTGGAATTGAAGTTGGGCAGACAGAAAAAGATTCAGATGATTGATGGTCAACAGGTCGAAGTGATAAGCCCTGGTTTAGCATCGGACGAAGAAGAAGAGATCGACATGATGGCCGTAGAAGGTTCAGATGGACAACAATACGTAGTTTTAGAGGTTATACAACTAGCAGAGGGTGAAGAACAAGCGATGGTAGTGGGTTCGGAAAACAGCGACGGTATCGTTGGTATGGATGGCGTGATGCAAGATGGAGAGTTGGACGATGATGTCATCAAGGCTTTGCAATCGGCCAGGCGGATAAACAAAGCCAgtgtagaagaagaagaagatgatgatgatgatgaagacAAGAAACCCGATATCGCCACCACTGAGGCCGACATGCAGAACTGTTTCGGATTTGACGAAGAAGAGGAAGACGACCAAAGAGAGACCCTAACCCTACTTTCAAACATGGACTGA
Protein Sequence: MTTNTQFDETTIKIEDTSENVTEIQSYLAGFQKEIGDNNIQTNSGGEENENETEEGTYFVDQAGHYYFQAKGDAQPVMTVMSALPQQAASDEGDEYIINADNEENETNDDQEERGPSNENQILINSGNAFQRVTVVPADNNSGELSYVLIVQDPDLKDNDNDEDEDDQDMAVYDFDDQDGSVQMDSDAEDDKSKIVKVFPRKSQSVSQAHMCNYCNYTSSKRYLLSRHMKSHSEERPHKCSVCERGFKTLASLQNHVNTHTGTKPHACSYCEAAFTTSGELVRHVRYRHTHEKPHKCSDCDYASVELSKLKRHIRCHTGERPYQCPHCTYASPDTFKLKRHLRIHTGEKPYVCDICSNRFTQSNSLKAHKLTHNIGDKPIFQCALCPTTCGRKTDLRIHVQKLHTSDKPLKCRRCGKSFPDRYSYKLHNKSHEGEKCFKCDLCPYASTSARHLESHMLIHTDQKPYECDLCDHSFRQKQLLRRHQNLYHNPEYIPPKPRDKTHECPECSRTFTHKGNLLRHMAAHDPDPQIQQKQLELKLGRQKKIQMIDGQQVEVISPGLASDEEEEIDMMAVEGSDGQQYVVLEVIQLAEGEEQAMVVGSENSDGIVGMDGVMQDGELDDDVIKALQSARRINKASVEEEEDDDDDEDKKPDIATTEADMQNCFGFDEEEEDDQRETLTLLSNMD

Similar Transcription Factors

Sequence clustering based on sequence similarity using MMseqs2

100% Identity: iTF_00431624; iTF_01244456; iTF_01307433; iTF_00376557; iTF_00830635; iTF_00830634; iTF_01188601; iTF_01239394; iTF_00196590; iTF_01241114;
90% Identity: -
80% Identity: -