Basic Information

Insect: Rhynchophorus ferrugineus
Gene Symbol: -
Assembly: GCA_014462685.1
Location: JAACXV010000147.1:276983-284438[+]

Transcription Factor Domain

TF Family: zf-C2H2
Domain: zf-C2H2 domain
PFAM: PF00096
TF Group: Zinc-Coordinating Group
Description: The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
Hmmscan Out: # of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc

1 11 0.00031 0.024 15.4 5.2 1 23 212 234 212 234 0.97

2 11 1.5e-05 0.0012 19.5 1.5 1 23 240 262 240 262 0.98

3 11 1.5e-05 0.0012 19.5 0.7 1 23 268 291 268 291 0.95

4 11 0.018 1.4 9.9 2.6 1 21 297 317 297 319 0.95

5 11 0.00015 0.012 16.4 1.9 1 23 325 347 325 347 0.99

6 11 3e-06 0.00024 21.7 0.2 1 23 353 375 353 375 0.98

7 11 0.00038 0.03 15.1 1.4 1 23 383 406 383 406 0.97

8 11 0.0001 0.0082 16.9 2.5 2 23 413 434 412 434 0.96

9 11 0.0002 0.016 16.0 0.3 1 23 440 462 440 462 0.98

10 11 1.3e-05 0.001 19.7 3.6 1 23 468 491 468 491 0.96

11 11 4.6e-07 3.6e-05 24.3 1.0 1 23 505 527 505 527 0.96

#	of	c-Evalue	i-Evalue	score	bias	hmm coord from	hmm coord to	ali coord from	ali coord to	env coord from	env coord to	acc
1	11	0.00031	0.024	15.4	5.2	1	23	212	234	212	234	0.97
2	11	1.5e-05	0.0012	19.5	1.5	1	23	240	262	240	262	0.98
3	11	1.5e-05	0.0012	19.5	0.7	1	23	268	291	268	291	0.95
4	11	0.018	1.4	9.9	2.6	1	21	297	317	297	319	0.95
5	11	0.00015	0.012	16.4	1.9	1	23	325	347	325	347	0.99
6	11	3e-06	0.00024	21.7	0.2	1	23	353	375	353	375	0.98
7	11	0.00038	0.03	15.1	1.4	1	23	383	406	383	406	0.97
8	11	0.0001	0.0082	16.9	2.5	2	23	413	434	412	434	0.96
9	11	0.0002	0.016	16.0	0.3	1	23	440	462	440	462	0.98
10	11	1.3e-05	0.001	19.7	3.6	1	23	468	491	468	491	0.96
11	11	4.6e-07	3.6e-05	24.3	1.0	1	23	505	527	505	527	0.96

Sequence Information

Coding Sequence: ATGTCTGCGCAATTTCCTGAAGGAACAACAATTAAACTCGAAGATACATCGGAAAATGTCACTGAAATACAATCGTATTTGGCTGGGTTCCAAAAAGAAATTGGGGACAATAACATACAAGCAAACGCAAGTGGAGATGACCAAGATGGAGAAAATGATGGTGATGAAGGGACTTACTTTGTGGATCAAGCGGGGCACTATTATTTCCAAGCTAAGGGTGACTCTCAACCTGTCATGACTGTAATGTCAGCACTGCCACAACAGGCAACATCAGAGGAAGGCGAAGAGTTCATAATTAATCATGAGAACGACGAAAGCGAACCCAGTGATGAACACGAAGAACATGGATCCGGGTCCAATAGCGACACCAACCAGATACTGATCAATTCGGGTAATGCTTTTCAGCGGGTCACCGTGGTACCCACGGACACAAATTCCGGAGAGCTTAGTTATGTGCTCATCGTGCAGGACCCAGACATGAAGGATGAGGAGCAAAATGACGAGGAACAAGATATGGCTGtttatgattTTGACGATCAAGATGGGAGCGTGCAAATGGATTCAGACGCGGAGGATGATAAGTCCAAGATCGTGAAAGTCGTGCCTAGGAAATCGCAAAGCGTTTCTCAAGCCCACATGTGTAATTACTGTAACTACACCAGTTCCAAAAGATACCTGCTTTCGAGGCATATGAAGTCACATTCGGAGGAGAGACCTCATAAATGTAGCGTGTGCGAGAGGGGTTTCAAAACGCTGGCTTCTCTGCAGAATCACGTCAATACTCATACAGGTACCAAGCCGCACGCTTGCAAGTACTGCGAGGCGGCGTTCACGACATCAGGTGAGCTGGTGAGACACATTAGATACCGGCACACCCACGAAAAACCTCATAAATGTGCGGAGTGCGATTATGCCAGCGTGGAATTGTCAAAGCTGAAGAGGCACATTCGATGCCATACCGGCGAGAGACCATATCAATGTCCTCATTGTACCTATGCTAGTCCTGATACTTTCAAGCTAAAACGACATTTGCGGATCCACACCGGCGAAAAGCCATACGAGTGCGACATATGCGGCGTTCGTTTTACCCAGAGCAACAGTTTGAAGGCTCATAAACTAATCCATAACATCGGGGATAAACCCGTCTTTCAATGTGAACTGTGTCCCACCACATGCGGTAGAAAAACCGACCTACGAATTCACGTCCAGAAGCTGCATACCTCAGATAAGCCACTGAAATGTAAGAGGTGTGGTAAAACCTTCCCTGACAGATATAGTTACAAGTTGCACAATAAATCCCACGAAGGAGAGAAATGCTTCAAGTGTGATCTATGCCCTTATGCGTCTATATCAGCCAGACACCTGGAATCCCACATGTTGATACACACCGATCAGAAACCTTACGAATGCGACCTTTGTGATCATACTTTTAGACAAAAACAGTTGCTCAAGAGACATCAAAACCTCTACCACAATCCAGAGTACATACCTCCTACCCCGAGAGAAAAAACTCACGAATGTCCAGAGTGCTCTAGAGCTTTCACCCATAAAGGTAATTTAATTCGGCATATGGCTGCCCACGATCCAGATCCGCAAATACAGAAACAGCAGTTGGAGTTGAAGTTGGGCAGACTAAAGAAAGTGCAGATGATTGACGGTCAACAGGTCGAAGTAATTGGCCCAGGATTGGCATCGGACGAGGAAGAAGAGATTGATATGATGGCGGTAGAAGGTTCCGATGGGCAACAATACGTTGTGTTAGAAGTGATCCAGTTGGCTGAAGGTGAGGAACAAGCAATGGTGGTCGGACCAGAAAACAGCGATGGCATTGTCGGCATGGATGGCGTTATGCAAGATGGAGAATTGGACGAAGATGTCATCAAAGCTTTACAATCAGTTCGGCGGGTTCAGAAGAGAGGCGGTGACGATGATGAGAAGAAACCAATGATGCAAAGTACCGAGTCGGATATGCAAAACTGCTTCGGTTTTGATgAAGAAGAAGAGGATGACCAACGCGAGACCTTGACCTTACTGTCGAATATGGACTGA
Protein Sequence: MSAQFPEGTTIKLEDTSENVTEIQSYLAGFQKEIGDNNIQANASGDDQDGENDGDEGTYFVDQAGHYYFQAKGDSQPVMTVMSALPQQATSEEGEEFIINHENDESEPSDEHEEHGSGSNSDTNQILINSGNAFQRVTVVPTDTNSGELSYVLIVQDPDMKDEEQNDEEQDMAVYDFDDQDGSVQMDSDAEDDKSKIVKVVPRKSQSVSQAHMCNYCNYTSSKRYLLSRHMKSHSEERPHKCSVCERGFKTLASLQNHVNTHTGTKPHACKYCEAAFTTSGELVRHIRYRHTHEKPHKCAECDYASVELSKLKRHIRCHTGERPYQCPHCTYASPDTFKLKRHLRIHTGEKPYECDICGVRFTQSNSLKAHKLIHNIGDKPVFQCELCPTTCGRKTDLRIHVQKLHTSDKPLKCKRCGKTFPDRYSYKLHNKSHEGEKCFKCDLCPYASISARHLESHMLIHTDQKPYECDLCDHTFRQKQLLKRHQNLYHNPEYIPPTPREKTHECPECSRAFTHKGNLIRHMAAHDPDPQIQKQQLELKLGRLKKVQMIDGQQVEVIGPGLASDEEEEIDMMAVEGSDGQQYVVLEVIQLAEGEEQAMVVGPENSDGIVGMDGVMQDGELDEDVIKALQSVRRVQKRGGDDDEKKPMMQSTESDMQNCFGFDEEEEDDQRETLTLLSNMD

Similar Transcription Factors

Sequence clustering based on sequence similarity using MMseqs2

100% Identity: iTF_01352005;
90% Identity: iTF_00376557;
80% Identity: -