Csor046318.1
Basic Information
- Insect
- Cosmopolites sordidus
- Gene Symbol
- -
- Assembly
- GCA_031761425.1
- Location
- JARFXV010002114.1:46141-50365[-]
Transcription Factor Domain
- TF Family
- zf-C2H2
- Domain
- zf-C2H2 domain
- PFAM
- PF00096
- TF Group
- Zinc-Coordinating Group
- Description
- The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
- Hmmscan Out
-
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc 1 11 0.00029 0.056 15.4 5.2 1 23 212 234 212 234 0.97 2 11 6.4e-05 0.012 17.4 2.5 1 23 240 262 240 262 0.98 3 11 0.00011 0.022 16.7 0.2 3 23 270 291 269 291 0.97 4 11 0.0086 1.7 10.8 3.5 1 21 297 317 297 319 0.95 5 11 0.00018 0.035 16.0 1.7 1 23 325 347 325 347 0.99 6 11 1.2e-05 0.0022 19.8 0.6 1 23 353 375 353 375 0.98 7 11 0.00065 0.13 14.3 2.1 1 23 383 406 383 406 0.97 8 11 6.3e-05 0.012 17.5 2.6 2 23 413 434 412 434 0.96 9 11 0.00019 0.036 16.0 0.3 1 23 440 462 440 462 0.98 10 11 1.2e-05 0.0023 19.7 3.6 1 23 468 491 468 491 0.96 11 11 1.7e-07 3.2e-05 25.6 1.8 1 23 505 527 505 527 0.98
Sequence Information
- Coding Sequence
- ATGACTACCCAATTCGTGGAAACAGCTACCGTTAAATTAGAAGATACATCTGAGAATGTTACTGAAATTCAGTCATATTTGGCTGGATTCCAAAAAGAAATCGGCGATACTAACATACCGTCAAATGCCAgtgGAGATGATCACGAAGGAGACAATGACGGGGAAGAAGGCACTTACTTTGTGGACCAGGCTGGGCACtattattttcaagctaaaGGAGAATCACAGCCTGTTATGACCGTAATGTCCACATTGCCACAACAGGCTGCATCAGAGGAAGGAGAGGAGTTCATAATCAATGACATGAATGATGAAAGCGAGCCTAGCGATGATCACGAAGAGCATGGATCAGGTTCAAACAGTGATACCAACCAGATACTCATAAATTCCGGCAATGCATTTCAAAGAGTTACAGTGGTTCCAGCTGACACAAATTCCGGCGAGCTCAGTTATGTTCTTATCGTACAGGATCCGGATATGAAAGATGGAGATCACAACGACGACGAACAGGATATGGCAGTGTATGATTTTGATGATCAGGATGGCAGTGTCCAGATGATTTCCGATGCGGAAGACGACAAGTCGAAGATTGTTAAGGTCCTGCCCAGAAAATCTCAGACCGTGTCCCAAGCTCACATGTGTAATTACTGTAATTATACCAGCTCCAAAAGGTACTTGTTGTCCAGACATATGAAGTCTCACTCGGAGGAAAGACCGCACAAGTGCAGCGTGTGCGAGAGAGGCTTCAAAACTTTAGCTTCTCTACAGAATCATTTTAACACCCACACTGGTACCAAACCACACGGTTGTAAATACTGTGAAGCTGCTTTTACAACGTCGGGGGAATTGGTGAGGCATGTTCGGTACCGTCACACTCACGAGAAACCCCACAAGTGTACGGAATGCGACTACGCCAGTGTGGAACTGTCAAAACTGAAGCGGCACATCCGATGCCACACTGGCGAAAGACCGTATCAATGCCCGCACTGTACGTATGCCAGTCCGGACATGTTCAAGCTCAAGCGACATCTCAGGATCCATACAGGAGAGAAACCGTACGAGTGCGACATATGCAGCGCTAGATTCACGCAAAGTAACAGTTTAAAGGCCCATAAACTGACCCATAATATTGGAGACAAGCCGGTTTTTCAGTGTGAGTTCTGCCCCACCACGTGCGGCAGAAAAACAGATTTAAGAATTCACGTCCAGAAGCTGCACACCTCCGACAAACCCCTGAAGTGTAAGAGATGCGGAAAGACATTCCCGGATAAGTACAGTTATAAGTTGCACAACAAATCCCACGAGGGCGAGAAGTGTTTCAAGTGCGATCTGTGTCCGTACGCGTCCATCTCAGCCCGGCATCTTGAATCTCACATGTTGATCCACACAGATCAGAAACCGTACGAGTGCGACCTGTGTGATCATACTTTCAGGCAGAAACAGTTGCTGAAGAGGCACCAGAACTTGTACCACAACCCGGAATATATACCGCCCACTCCCCGAGAAAAAACCCACGAATGCCCGGAATGTTCTAGGGCATTTACCCATAAAGgAAATTTAATCAAACATATGGCGACCCACGATCCAGATCCCCAAATCCAGAAGCAAAAGCTGGAGTTGAAATTGGGACGGCTTAAGAAAATACAGATGATCGATGGTCAACAGgTAAAAGTCATAGGACCTGGTTTAGGATCAGACGAGGAAGAGGAGATCGACATGATGGCCGTAGAGGGCTCTGACGGTCAACAATACGTCGTCTTGGAGGTGATCCAGTTGGCCGAAGGTGAAGAACAACAAACAATGGTGGTGGGATCGGATAACAGTGATGGTATCATCGGCATGGACGGTGTAATGCAAGATGGAGAGTTGGACGAGGACGTCATAAAGGTCTTGCAATCGGCACGACGAGTGCAGAAAGCGGATGTGGATGAGGATGAGAAGAAACCAATAATTCCAAACACAGAGTCTGATATGCAGAATTGTTTTGGATTTGATGAAGAAGAGGAAGACGAACAGCGGGAGACCCTGACCTTATTATCAAACATAGACTGA
- Protein Sequence
- MTTQFVETATVKLEDTSENVTEIQSYLAGFQKEIGDTNIPSNASGDDHEGDNDGEEGTYFVDQAGHYYFQAKGESQPVMTVMSTLPQQAASEEGEEFIINDMNDESEPSDDHEEHGSGSNSDTNQILINSGNAFQRVTVVPADTNSGELSYVLIVQDPDMKDGDHNDDEQDMAVYDFDDQDGSVQMISDAEDDKSKIVKVLPRKSQTVSQAHMCNYCNYTSSKRYLLSRHMKSHSEERPHKCSVCERGFKTLASLQNHFNTHTGTKPHGCKYCEAAFTTSGELVRHVRYRHTHEKPHKCTECDYASVELSKLKRHIRCHTGERPYQCPHCTYASPDMFKLKRHLRIHTGEKPYECDICSARFTQSNSLKAHKLTHNIGDKPVFQCEFCPTTCGRKTDLRIHVQKLHTSDKPLKCKRCGKTFPDKYSYKLHNKSHEGEKCFKCDLCPYASISARHLESHMLIHTDQKPYECDLCDHTFRQKQLLKRHQNLYHNPEYIPPTPREKTHECPECSRAFTHKGNLIKHMATHDPDPQIQKQKLELKLGRLKKIQMIDGQQVKVIGPGLGSDEEEEIDMMAVEGSDGQQYVVLEVIQLAEGEEQQTMVVGSDNSDGIIGMDGVMQDGELDEDVIKVLQSARRVQKADVDEDEKKPIIPNTESDMQNCFGFDEEEEDEQRETLTLLSNID
Similar Transcription Factors
Sequence clustering based on sequence similarity using MMseqs2
- 100% Identity
- iTF_01352005;
- 90% Identity
- iTF_01307433;
- 80% Identity
- -