Sflv010864.1
Basic Information
- Insect
- Sipha flava
- Gene Symbol
- lrrfip2
- Assembly
- GCA_003268045.1
- Location
- NW:314794-327722[+]
Transcription Factor Domain
- TF Family
- LRRFIP
- Domain
- LRRFIP domain
- PFAM
- PF09738
- TF Group
- Unclassified Structure
- Description
- LRRFIP1 is a transcriptional repressor which preferentially binds to the GC-rich consensus sequence (5'- AGCCCCCGGCG-3') and may regulate expression of TNF, EGFR and PDGFA [1]. LRRFIP2 may function as activator of the canonical Wnt signalling pathway, in association with DVL3, upstream of CTNNB1/beta-catenin [2].
- Hmmscan Out
-
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc 1 2 1.7e-99 2.1e-95 319.0 31.8 1 300 213 512 213 512 0.92 2 2 0.02 2.6e+02 0.2 4.6 121 172 511 562 510 572 0.90
Sequence Information
- Coding Sequence
- atgaattttaatcacGTTGATATGAATGTGACACCGCATGACTTGGTTACTGGAGCTCATATTACTCATATCTACATAAATCAATCTTCAGACACTTTAAATGGAAGATCATTGGCtgataaattacttataaacaGACCTGTTGAATTTGGTACAATCCTGTCATCACTTGCGTCAGAAGAACCACCATCATTATATTCTGGCAGTATCACTGATGGTAAAGATGGAGTAGAGGAAATCTTAAGTAATTCAACTCCGTACGAATACGctaaaattattcaatcatCACAAATTACACTGGATAATAATGGAACATATTCATGTCACATAtgtataaatgataatgatacgCTAAACTCGATCTGCGAGACTATAAATACTAAAAGCACTCATACAGAATGCTACGCCGATACTAATCGATCATATCCCTCATCAGATGACGACGAAACTTATTGTAGATATTCTGTTACCGATATTGATGAACTATCagataatgttttaaatgatcGCCAACCTATTTCTAAAAGGATACCAAGGAATAGTTctagttatgattattattccaGTGTTGATTCTGTAGTGATTGATTCTGAAGCTGATGGCATTGTAACTTTTCTGGGCAAGAGTAATGATAaagCAGAAGCTCGTTTGGCTGCAAGGCGACAAGCTCGTGCTGAAGCAAGAGAAATTCGTATGCGAGAAATTGAACGACAGCAAAAAGAAGCCGAAGAAAATGCAGATAAAGCTTTTGATATGTATGCAGCAGatGGGCCAAGTATAAATCGAGTATCCCGAGTAGCTACAAGTACTGCCAGTCCACGAGCAGCTAGTTCTATACTAAATACGAATAATTACCAATCTAGTCGGCGTAATTCGGTTGATTCTCTTGATGAAACTACTCCTAATTTTCGTGATTTTAGAaTGGAATTAAAAGATCTAGAAGAAAAGTTCAGGAAAGCTATGGTACAAAATGCTCAACTTGACAATGAAAAAGCCGCTGTAACCTACATGGTAGAGCTGTATAAAGACAAGTACACTGATATTGAAGAAGAACTTATGCACGTAAAaAGAGAACACAAAGAAAGCGGCAGGgaaaatgaaaagttaaaaCGTTTATTGGCAACTCAAAAACTAGAATGTACTGCACTTAAACGAGAGTTAGAAGATCGTGATAAACTCATCGAGgaaAAAGGACTTGTAATTATAAGCACAGAACAAGATGATTGGAATGAAAGTAGTGaccaaagtaataataaaataaaacgtgccTTAGTTTCTGTTGAAAATGCTCAATTGTTGCAAGACGCAGGAGAGGGTTGTTTAGATGTGCGACTCAAAAAGTTTACTGAAGAACGTAATAGTTATTTAGAAGAGATCAATCAACTCAAATTAGAGTTGCAGGAAGCCAAACGCCATAGTGATAGCCATTACAACGGTACAGATTCAGACGATTTGGAAGATGCCCAAAaagAAACAAACAAAGTTCTTGgggattataaatttaagtggCAAAAGGCTGAACAAGACATTTCTACATTGCAagcaaatgtAGCCAGACTTGATAGTCAAGTTGTTAGATATAAAACAGCTTCTGAAGCAGCTGAAAAAGCTGAAGATGAACTAAAGTTGGAAAAAAGAAAACTTCAGCGAGAGCTTCGAGAAGCTCAagcaaaaattgaagaattgGAAACATCTAATATGCATTTGTTAAAACGCTTTGATAAATTAAAGAATGCCAAGTCTAGTTTATTGAAAGACCTGTAA
- Protein Sequence
- MNFNHVDMNVTPHDLVTGAHITHIYINQSSDTLNGRSLADKLLINRPVEFGTILSSLASEEPPSLYSGSITDGKDGVEEILSNSTPYEYAKIIQSSQITLDNNGTYSCHICINDNDTLNSICETINTKSTHTECYADTNRSYPSSDDDETYCRYSVTDIDELSDNVLNDRQPISKRIPRNSSSYDYYSSVDSVVIDSEADGIVTFLGKSNDKAEARLAARRQARAEAREIRMREIERQQKEAEENADKAFDMYAADGPSINRVSRVATSTASPRAASSILNTNNYQSSRRNSVDSLDETTPNFRDFRMELKDLEEKFRKAMVQNAQLDNEKAAVTYMVELYKDKYTDIEEELMHVKREHKESGRENEKLKRLLATQKLECTALKRELEDRDKLIEEKGLVIISTEQDDWNESSDQSNNKIKRALVSVENAQLLQDAGEGCLDVRLKKFTEERNSYLEEINQLKLELQEAKRHSDSHYNGTDSDDLEDAQKETNKVLGDYKFKWQKAEQDISTLQANVARLDSQVVRYKTASEAAEKAEDELKLEKRKLQRELREAQAKIEELETSNMHLLKRFDKLKNAKSSLLKDL
Similar Transcription Factors
Sequence clustering based on sequence similarity using MMseqs2
- 100% Identity
- iTF_00468934; iTF_01169840;
- 90% Identity
- -
- 80% Identity
- -