Pace003922.1
Basic Information
- Insect
- Periphyllus acericola
- Gene Symbol
- Lrrfip2
- Assembly
- GCA_949715065.1
- Location
- OX454264.1:61852119-61856385[+]
Transcription Factor Domain
- TF Family
- LRRFIP
- Domain
- LRRFIP domain
- PFAM
- PF09738
- TF Group
- Unclassified Structure
- Description
- LRRFIP1 is a transcriptional repressor which preferentially binds to the GC-rich consensus sequence (5'- AGCCCCCGGCG-3') and may regulate expression of TNF, EGFR and PDGFA [1]. LRRFIP2 may function as activator of the canonical Wnt signalling pathway, in association with DVL3, upstream of CTNNB1/beta-catenin [2].
- Hmmscan Out
-
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc 1 2 3.5e-99 2.3e-95 319.9 31.7 1 300 207 505 207 505 0.92 2 2 0.098 6.5e+02 -0.1 4.8 121 172 504 555 503 564 0.90
Sequence Information
- Coding Sequence
- ATGAATGTGACACCGCTTGAATTAGTTACTGGAGCACATATTACtcatatttacataaatcaaACTCCAGACACTTTGAATGAAAAATCGTTGGAcgataaattactaattaacgCACCTGTTGGATTTGATACATCCCAGGCTTCTTTTGCGTTAGAAGAATCGCCATCGTTATTATATTCTGGCAGTACCAATGAGGGTAAAGATGCAGTAGTGGACATCTTAAGTAATTCAACTCCATACGAATATGCCAAAGTTATTCAATCTTCTCaattaatacttgataataATGGAACATATTCATGTCACATAtgtataaatgataatgataCGCTTAACTCGGTATGTGGGACTATAAATACTAATGGCGCTCGTACAGAATGCAACGCCGATACTAGTCGTTCTTATCCATCGTCGGACGACGACGGATCTTACTGTAGATATTCTGTTACTGACATCGACGAACTATCAGATAGTATTTTTAACGATCGCCAACTGAGTCCTAATAGGGTACTAAAAAATACTTCTAGTTATGACTGTTATTCCAGTAGTGATTCTGTAGTCATTGATTCTGAAGTTGATGGCATTGTAACGTTTCTGGGCAAGAGTTATGATGAagcaGAAGCTCGTTTGGCTGCAAGGCGACAAGCTCGTGCTGAAGCAAGAGAAATTCGTATGCGAGAAATTGAGCGGCAGCAAAAAGAAGCCGAAGAAAATGCAGATAAAGCTTTTGATATGCATGCAGCAGATGGGCCAAGTATAAATCGAGCATCCCGAGTAGGTACAAGTACTGCCAGTCCACGGGCAGCCAATTCCATACTAAACACGAACAGTTACCAATCTAGTCGGCGTAATTCGGTTGATTCTCTTGATGACTCTACCCCAAATTTTCGTGATTTTaggATGGAATTAAAAGACCTAGAAGAAAAGTTCCGGAAAGCTATGGTTCAAAATGCTCAACTTGACAATGAAAAAGCAGCTGTAACATATATGGTAGAGTTGTATAAAGACAAGTACACTGATATCGAAGAGGAACTTATGcacataaaaCGAGAACACAAGGAAAGCTGCAGAGAAAACGAAAAGTTAAAACGTCTACTGGCTACTCAAAAACTAGAATCTACTGCACTTAAACTAGAACTGGAAGATCGTGATAAACTTATCGAGGAAAAAGGACTTGTAATTATAAGCACAGAACAAGAAGAATGGAATGATAGTGACCaaagtaatagtaaaataaaacgtgCCTTAGTTTCTGTTGAAAATGCTCAATTGTTGCAAGACGCTGGAGAGGGTTGTTTAGATGTACGACTCAAAAAGTTTACTGAAGAACGCAATAGCTATTTAGAAGAAATCAACCAACTCAAATTAGAGTTGCAAGAAGCCAAACGTCATAGTGATAGCCATTACAACGGTACAGACTCAGACGATTTGGAAGATGCCCAAAAAGAAACAAACAAAGTTCTTGGGGATTATAAATTCAAGTGGCAAAAGGCTGAACAAGACATTTCTACATTACAAGCAAATgtAGCAAGACTTGATAGTCAAGTTGTTAGATATAAAACAGCTTCTGAAGCAGCTGAAAAAGCTGAAGATGAACTTAAGttggaaaaaagaaaacttcAACGAGAGcTTCGGGAAGCTCAAGCAAAAATTGAAGAGTTGGAGACATCTAATATGCATTTGTTAAAACGCTTTGATAAACTAAAGAACGCAAAATCTAGTTTATTGAAAGACCTGTAA
- Protein Sequence
- MNVTPLELVTGAHITHIYINQTPDTLNEKSLDDKLLINAPVGFDTSQASFALEESPSLLYSGSTNEGKDAVVDILSNSTPYEYAKVIQSSQLILDNNGTYSCHICINDNDTLNSVCGTINTNGARTECNADTSRSYPSSDDDGSYCRYSVTDIDELSDSIFNDRQLSPNRVLKNTSSYDCYSSSDSVVIDSEVDGIVTFLGKSYDEAEARLAARRQARAEAREIRMREIERQQKEAEENADKAFDMHAADGPSINRASRVGTSTASPRAANSILNTNSYQSSRRNSVDSLDDSTPNFRDFRMELKDLEEKFRKAMVQNAQLDNEKAAVTYMVELYKDKYTDIEEELMHIKREHKESCRENEKLKRLLATQKLESTALKLELEDRDKLIEEKGLVIISTEQEEWNDSDQSNSKIKRALVSVENAQLLQDAGEGCLDVRLKKFTEERNSYLEEINQLKLELQEAKRHSDSHYNGTDSDDLEDAQKETNKVLGDYKFKWQKAEQDISTLQANVARLDSQVVRYKTASEAAEKAEDELKLEKRKLQRELREAQAKIEELETSNMHLLKRFDKLKNAKSSLLKDL
Similar Transcription Factors
Sequence clustering based on sequence similarity using MMseqs2
- 100% Identity
- iTF_01346452;
- 90% Identity
- -
- 80% Identity
- -