Dpla000271.1
Basic Information
- Insect
- Drepanosiphum platanoidis
- Gene Symbol
- LRRFIP2
- Assembly
- GCA_948098885.1
- Location
- OX402533.1:6494554-6499025[-]
Transcription Factor Domain
- TF Family
- LRRFIP
- Domain
- LRRFIP domain
- PFAM
- PF09738
- TF Group
- Unclassified Structure
- Description
- LRRFIP1 is a transcriptional repressor which preferentially binds to the GC-rich consensus sequence (5'- AGCCCCCGGCG-3') and may regulate expression of TNF, EGFR and PDGFA [1]. LRRFIP2 may function as activator of the canonical Wnt signalling pathway, in association with DVL3, upstream of CTNNB1/beta-catenin [2].
- Hmmscan Out
-
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc 1 2 1.1e-99 1.6e-95 319.6 34.2 1 300 216 515 216 515 0.93 2 2 0.0035 55 2.7 5.2 121 172 514 565 513 574 0.93
Sequence Information
- Coding Sequence
- ATGAACGACAGTCATATTAATATGAATATTTCATCGTGCGACTTGATTACCGGAGCGCATATTACCCATATTTACATAAACCAAACTGCAGATAATTTAAATGAAAAATCGTTAGAGAATAAATTACTCGTCAAAGTGCCCGTTGAGTTTAATACGTCGAATTCTACTTTCGCGTCAAAAGAATCGCCGTCGTTATATTCTGGCAGTGTTGAAAACGGCAATGATGCAGTAGTGCAAATCTTAAATAACTCAAATGCGTATGAATATTCCAATGTTATTCAATCGTCTCAATTGATATTGGATAATAACGGAGTGTATTCGTGTCACATATGTATAAACGATGATGAAACACTAAGTTCAATGTGCGAGACTATAAATGAAACTAATGGGATTCGTGCAGAATGCGACGCCGACATTGGCAATATTAATCATTCTTATCCATCGTCGGACGATGACGGATCTTACTGTAGATATTCTATTACTGATATTGACGAACTATCGGATACATTAAATGATCCTCAACAGAGTCTTAATAGGGTACAGAGCAATAGTTCGGGTTATGACTATTCTTCCAATGGTGATTCTTTAGTGATTGATTCTGAAGCTGATGGCATCATAACATTTCTGGGCAAGAGTAATAATGAAGCAGAATCTCGTTTGGCCGCAAGACGACAAGCTCGCGCCGAAGCAAGAGAAATTCGTATGCGAGAAATTGAACGACAGCAAAAGGAAGCAGAAGAAAATGCTGATAAAGCTTTTGATATGTATGCAGCAGATGGGCCTAGTGTAAATCGAGTATCTCGAGTTTCTACAAGTACTACCAGTCCACGAGCAGCCAATTCCATACTAAATACAAACAGTTACCAATCTAGTCGACGTAATTCGGTTGATTCTCTTGATGAATCTACTCCTAATTTTCGAGATTTTAGGATGGAGTTGAAAGACCTGGAAGAAAAGTTCCGGAAAGCTATGGTTCAAAATGCTCAACTTGACAATGAAAAAGCAGCCGTGACTTATATGGTAGAACTGTACAAAGACAAGTACACTGATATCGAAGAAGAACTTATGCATATAAAACGAGAACACAAGGAGAGTTGTAGGGAAAACGAAAAGTTAAAACGTTTATTGGCTACTCAAAAACAAGAAGCTACAATGCTTCAACAAGAGCTAGAAGATCGTGATAAACTCATTGAGGAAAAAGGACTTGTAATTATAAGTACAGAACAAGAAAATTGGAATGAAAATAGTGACCAAAGTAATAGTAAAATAAAACGTGCCTTAGTTTCTGTTGAAAATGCTCAATTGTTGCAAGACGCTGGAGAAGGTTGCTTAGATGTGCGACTCAAAAAGTTTACCGATGAACGCAATAGCTATTTAGAAGAAATTAACCAACTCAAATTAGAGTTACAAGAGGCCAAACGCCATAGTGATAGTCATTACAACGGTACAGACTCAGATAATTCGGAAGATGCCCAAAAAGAGACTAACAAAGTACTTGGAGATTATAAATTCAAGTGGCAAAAGGCTGAACAAGACATTTCTACATTACAAGCAAATGTTGCCCGACTTGAAAGTCAAGTTATTAGGTATAAAACAGCTTCTGAAGCAGCCGAAAAAGCTGAAGATGAACTCAAATCAGAAAAACGCAAACTACAACGCGAGCTTCGAGAAGCCCAAGCAAAGATTGAAGAATTAGAAACATCTAACATGCATTTGTTAAAACGATTTGACAAACTAAAGAATGCCAAATCCAGTCTATTAAAAGATTTGTAA
- Protein Sequence
- MNDSHINMNISSCDLITGAHITHIYINQTADNLNEKSLENKLLVKVPVEFNTSNSTFASKESPSLYSGSVENGNDAVVQILNNSNAYEYSNVIQSSQLILDNNGVYSCHICINDDETLSSMCETINETNGIRAECDADIGNINHSYPSSDDDGSYCRYSITDIDELSDTLNDPQQSLNRVQSNSSGYDYSSNGDSLVIDSEADGIITFLGKSNNEAESRLAARRQARAEAREIRMREIERQQKEAEENADKAFDMYAADGPSVNRVSRVSTSTTSPRAANSILNTNSYQSSRRNSVDSLDESTPNFRDFRMELKDLEEKFRKAMVQNAQLDNEKAAVTYMVELYKDKYTDIEEELMHIKREHKESCRENEKLKRLLATQKQEATMLQQELEDRDKLIEEKGLVIISTEQENWNENSDQSNSKIKRALVSVENAQLLQDAGEGCLDVRLKKFTDERNSYLEEINQLKLELQEAKRHSDSHYNGTDSDNSEDAQKETNKVLGDYKFKWQKAEQDISTLQANVARLESQVIRYKTASEAAEKAEDELKSEKRKLQRELREAQAKIEELETSNMHLLKRFDKLKNAKSSLLKDL
Similar Transcription Factors
Sequence clustering based on sequence similarity using MMseqs2
- 100% Identity
- iTF_01346452;
- 90% Identity
- -
- 80% Identity
- -