Sver014677.1


Basic Information
Transcription Factor Domain
Sequence Information
Similer Transcription Factors

Basic Information

Insect
Shargacucullia verbasci
Gene Symbol
clz9
Assembly
GCA_947562105.1
Location
OX387281.1:540947-543343[-]

Transcription Factor Domain

TF Family
HTH
Domain
HTH_psq domain
PFAM
PF05225
TF Group
Helix-turn-helix
Description
This DNA-binding motif is found in four copies in the pipsqueak protein of Drosophila melanogaster [1]. In pipsqueak this domain binds to GAGA sequence [1].
Hmmscan Out
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc
1 2 1.5e-08 9.3e-06 25.5 0.0 4 38 28 63 27 68 0.87
2 2 6.5 4.2e+03 -2.2 0.1 25 37 704 716 704 720 0.79

Sequence Information

Coding Sequence
ATGGTTCGTGAATATAAGAGAACGTATAGGCACGTAAGACAAGGAAAAAGCTTCTTACCTTATGTGTCTTATAGTATAAAAGACTTAGAAAATGCTGTGCGTGAAGTGAGAGAAGAACAAAGTTCAGTCCGACAAGTAGCAACCAAATATAAAATACCCAAAAGCACGCTTGCCCGTAAAATTAAAAAAGATACGATGTATGAAAGTGCAGGTCACCCTACTTTATTTAATGCCACTGAAGAGATTGCCTTTCTGACATATTGCGAAGTATTAGGCGAATGGGGTTTCCCACTAGACGCTTTCGATTTAAGAGTCTTAGCACAGAAATACTTAAACAGAATTGGCAGGACTGTTCACAACCTTAAAGATAATCTTCCCGGGCGTGACTGGGCTCTGAGTTTCATGAAAAGATATAAAAATCGATTAACTCACAAATTTGCGACCAAAATTTCTACCGAAAGAGCGAAAGTGTCGCCTGAAACAATTGATGCGTTTTTTGAGAATTATATAACCACTGTATCAGGAGTTCCTCCTGAAAATATTGTAAACTTCGATGAGACGAATCTTTGCGATGATCCCGGAGCTAAGAAGTATGTATTTAAAAGAGGCACAAAGTACCCAGAAATAGTCGTAAATAATTCGAAGACGGCAGTGAGCTTAATGTTTACCGGAACAGCAGATGGCCAAATGTTACCCATATACGTTGTGTATAAAGCGGAACGCTTATGGCAGCCCTGGGTAGAGGGAGGCCCTCCCGACACTAGATACAATAGGTCAAAATCCGGCTGGTTCGACATGACATGCTTCGAAGATTGGTTCGAGACTGTAATTGTTCCATTCGCAAAAAATAAGCCTGGAAAAAAAGTCATTATTGGCGATAATCTATCGTCCCATTTTTCAGAGAAAATTTTACAATCTTGCGAGTCACTAAACATTTCATTCGTCTGTTTGCCGCCCAAATCTACACATTTGATGCAACCGTTAGATGTGGCCTTTTATGGGCCTTTAAAAAAATACTGGAAGAACATTCTAACAAGCTGGAAAACGACAGCAGATGGTAGAAAATATAAAACTATGGCCAAGTCTTGTTTTCCAAAGCTTCTTACTCAGTTATGTGATTTAATGATTGAGAAAGACGTGATATCAGCTAATTTAAAAGCGGGTTTTGAAAAGAGCGGTCTATTCCCTGTAAACCCTGAAAGACCAAAATCAAGATTACCAAAGGCACTGGTTGCAGCTGCAAAAGTTAACGCAACTACTTCTGAAGTTGTGATTGATATTTTGCAAGACATGAGAGGCTTTAAGGACACTGCTCCAAGCAAAAGAAGCAAGCGGTGCGATGTAGAACCAGGGAAAAGCATAAGTGCAAAAGATTTAACTCCAAAACCAACAACGAGTACTAAAGGCAAAGGACAAGGAAAGAAAACCAAAACTGATGCAAATAAAGAAAATATATCGTCGTCTCAGAATATCAAAAAAAGTCTAAATCAAGCAAAATCGAGACAAAAGAAAGCTAAACGTGATTTAGAAGAATCAACCAGTGTGTCTGATAATGTTAGTGAGCACAGTGATTCCGATTTAATGGATTTAGATCTGAGAAAAGAGTATGACAGTGATCATACCAGCTGTTCAGAAGAACAGGCTTTTTTGATATCCTATTTTAATAATAGAGCCATATCGGAAGAGCCTGTACCAGGCCCTAGTGGGGAATCATCACGACGCCGTACAGTGAAATCAAGACCAGAGCCTAGTAAGAATACATTGCCAGATCATGAAGAGGACCTGATATTAGGTTCTAATAAAAAGACAGCACGAAGTCGTAATGTGACGCCACTGACAAACCCGAACGAGGAGGAGCTAGCACAAAAGCCAGGGCCTGGCTCTAACCTGGAGTCAGTACAACACTCTAATGGCGAGCTAGCTCAGATCTGTGAGGAGGAGATAATACCACGTCCACTAGCACAAGACTCTAATGAGCAGCCAGCACCAGGCCCAATTAAGCAGCTAGTACCAGAAAGTAATGAGGAGCTAGCAGATGATACAATTAAAAATCTAGCACTAGGCCCTTATGAGGGGTCCAGGGAATCAGATCTTTATCAGAACCTATATATTTATAACGTGAATGATAAAGTCTTAGTGCGGTACTATGTCAAAAAGTCATGGAAATATTATGTTGGCGTGATCGAAAATATTGAAAACCATTTTTACACCATTTCATTCTACAAAACTGTACGCCAAAATAATTCAGACATAATATTTATGAAACCAAAAAGAGTCGACCGAGATATTTTACAGGAAGTTTCATTGGTGAAAAATATTGATATTGAACAAATTTCATCCAAACCAGAAAAATACTTGTTATGTAATGAAGATGACAAGATTTATTTTGATTGTTAA
Protein Sequence
MVREYKRTYRHVRQGKSFLPYVSYSIKDLENAVREVREEQSSVRQVATKYKIPKSTLARKIKKDTMYESAGHPTLFNATEEIAFLTYCEVLGEWGFPLDAFDLRVLAQKYLNRIGRTVHNLKDNLPGRDWALSFMKRYKNRLTHKFATKISTERAKVSPETIDAFFENYITTVSGVPPENIVNFDETNLCDDPGAKKYVFKRGTKYPEIVVNNSKTAVSLMFTGTADGQMLPIYVVYKAERLWQPWVEGGPPDTRYNRSKSGWFDMTCFEDWFETVIVPFAKNKPGKKVIIGDNLSSHFSEKILQSCESLNISFVCLPPKSTHLMQPLDVAFYGPLKKYWKNILTSWKTTADGRKYKTMAKSCFPKLLTQLCDLMIEKDVISANLKAGFEKSGLFPVNPERPKSRLPKALVAAAKVNATTSEVVIDILQDMRGFKDTAPSKRSKRCDVEPGKSISAKDLTPKPTTSTKGKGQGKKTKTDANKENISSSQNIKKSLNQAKSRQKKAKRDLEESTSVSDNVSEHSDSDLMDLDLRKEYDSDHTSCSEEQAFLISYFNNRAISEEPVPGPSGESSRRRTVKSRPEPSKNTLPDHEEDLILGSNKKTARSRNVTPLTNPNEEELAQKPGPGSNLESVQHSNGELAQICEEEIIPRPLAQDSNEQPAPGPIKQLVPESNEELADDTIKNLALGPYEGSRESDLYQNLYIYNVNDKVLVRYYVKKSWKYYVGVIENIENHFYTISFYKTVRQNNSDIIFMKPKRVDRDILQEVSLVKNIDIEQISSKPEKYLLCNEDDKIYFDC

Similar Transcription Factors

Sequence clustering based on sequence similarity using MMseqs2

100% Identity
iTF_00826787; iTF_00790179; iTF_00634263; iTF_00634264; iTF_00634272; iTF_00947830; iTF_00810942;
90% Identity
-
80% Identity
-