Hchr018993.2
Basic Information
- Insect
- Hemistola chrysoprasaria
- Gene Symbol
- clz9
- Assembly
- GCA_947063395.1
- Location
- OX346727.1:2714578-2716895[+]
Transcription Factor Domain
- TF Family
- HTH
- Domain
- HTH_psq domain
- PFAM
- PF05225
- TF Group
- Helix-turn-helix
- Description
- This DNA-binding motif is found in four copies in the pipsqueak protein of Drosophila melanogaster [1]. In pipsqueak this domain binds to GAGA sequence [1].
- Hmmscan Out
-
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc 1 2 1.3e-11 8.2e-09 35.7 0.0 2 36 26 60 25 63 0.94 2 2 0.29 1.9e+02 2.5 0.1 23 37 573 587 573 592 0.83
Sequence Information
- Coding Sequence
- ATGGTTCGTGAATACAAGAGAACGTATCGGCACGTAAGACTTGGAAAAACATTCTTACCTTATGTGTCTTATACCACAGAAGACCTAGAAAATGCTGTGCGTGAAGTGAGAGAAGGAGACAGTTCAGTCCGACAAGCAGCaaccaaatataatatacccaAAAGCACACTTGCCCGAGTTCCTcctgaaaacataataaattttgaTGAAACTAATCTTTGTGATGATCCTGGAGCTAAGAAGTATGTATTCAAAAGAGGCACAAAGTACCCGGAAAGAGTCTTAAATAATTCGAAGACGGCAGTGAGCTTAATGTTTACCGGAACGGCAGATGGCCAAATGTTACCCATATACGTTGTGTACAAAGCAGAACGCGTATGGCAGCCATGGATAGAGGGCGGACCTCCCGACACTAGGTACAATAGGTCAAAATCCGGCTGGTTTGACATGACATGCTTTGAAGATTGGTTCGAAACAGTAATTGTTccattcgcaaaaaaaaaaactggaaaAAAAGTCATTATTGGCGATAATTTATCGTCGCATTTTTCAGAGAAAATTCTAGAATCTTGCGAGTCACTAAACATTTCATTCGTCTGCTTGCCGTCCAAGTCCACACACTTGATGCAACCGTTAGATGTCGCCTTTTATGGGCCGTTAAAGAAATACTGGAAGAACATTCTAACAAACTGGAAAACGACAGCAGATGgtagaaaatataaaacaatggcAAAGTCTTGTTTTCCAAAGCTTCTAGCTCAATTATGTGATTTAATGATTGAGAAAGACGTGATATCAGCCAATTTAAAAGCGGGTTTTGAAAAGAGCGGTCTATTCCCTGTAAACCCTGAAAGACCGAAATCAAGACTACCAAGGGCACTGGTTACAGCTGCAGAAGTTAACCTAGCTACTTCTGAAGTTGTGATTGATATATTACAAGACATGAGAGGCTTTAAGGACACTGCTCCAAGCAAAAGAAGGAAGCGGTGCGATGTAGAACCAGGGAAAAGCATATGTGCAAAAGATTTAACTCCAAAACCAACAACGAGCACTAAAGGACAAGGACAAGGAAAAAAAACCAAAACTCatgtaaacaaaaaaattacaacgtCATCTCAGAATATCAACAAAAGTAGGAATCCAACAAAAAAGAGACTGAACAAAGCTCAACATGATTTAGACGAATCAACCAGTGTGTCTGATAATATGAGCCAGCACAGTGATTCTGATTTGATGGATTTAGATTTGAGAAAAGAGTATGGCAGTGATGATACCAACTGTTCTGAAGAACAAGCTTTTTCGATATCCTATTTTGAAAATAGAGTTCTATCAGCAGAGCCCGAACCAGGCCCTAGTGGAGAATCATCACGACGTCGTGCAGTGAAACCAAGACCAGAGCCTTGTGAGAATACATTGCCAGACTATGAAGAGGAGTTAATATTAGGTTCTAATGAAAAGGCAGCACGTAGTCGTAATGAGGCGTCAATGGCAAGCCCGAACGAAGAGGAGCTAGCACAAAAGCCAGGGTATGGCTCTAACCTGGAGTCAGTACAACACCATAGTGGTCAGCTAGCTCAGAACTGTGAGGAAGAGATAATAGCATGTCCACTAGCACAAGGCTCTAATGAGCAGCCAGCACCAGGCCCAATTAATCAGCTAGAACCAGAAAATAATGAGGAGGTAGCAGGTTATTCAAATGAAAATTTACCACCAGATTCTAATATTTATAACGTAAATGATACGGTCTTAGTGAGGTACTACATTAAAAAGTCTTGGAAATATTATGTTGGCGTGATAGAACATTTTGAAAACTATTCTTACACCATTTCATTCTACAAAACTGTACGGCAAAATGATTCAGACATAATACTTATGAAACCTAAAAGAGTCGACCGAGATATTTTACCAGAAGTTTCATTGGtgaaacatattaatataaaacaaatttcaTCCAAACCTGAAAAATATTTGGTTGAAAATGAAGATGACAAGATTTATTTTGATTGTTAA
- Protein Sequence
- MVREYKRTYRHVRLGKTFLPYVSYTTEDLENAVREVREGDSSVRQAATKYNIPKSTLARVPPENIINFDETNLCDDPGAKKYVFKRGTKYPERVLNNSKTAVSLMFTGTADGQMLPIYVVYKAERVWQPWIEGGPPDTRYNRSKSGWFDMTCFEDWFETVIVPFAKKKTGKKVIIGDNLSSHFSEKILESCESLNISFVCLPSKSTHLMQPLDVAFYGPLKKYWKNILTNWKTTADGRKYKTMAKSCFPKLLAQLCDLMIEKDVISANLKAGFEKSGLFPVNPERPKSRLPRALVTAAEVNLATSEVVIDILQDMRGFKDTAPSKRRKRCDVEPGKSICAKDLTPKPTTSTKGQGQGKKTKTHVNKKITTSSQNINKSRNPTKKRLNKAQHDLDESTSVSDNMSQHSDSDLMDLDLRKEYGSDDTNCSEEQAFSISYFENRVLSAEPEPGPSGESSRRRAVKPRPEPCENTLPDYEEELILGSNEKAARSRNEASMASPNEEELAQKPGYGSNLESVQHHSGQLAQNCEEEIIACPLAQGSNEQPAPGPINQLEPENNEEVAGYSNENLPPDSNIYNVNDTVLVRYYIKKSWKYYVGVIEHFENYSYTISFYKTVRQNDSDIILMKPKRVDRDILPEVSLVKHINIKQISSKPEKYLVENEDDKIYFDC
Similar Transcription Factors
Sequence clustering based on sequence similarity using MMseqs2
- 100% Identity
- iTF_01342158;
- 90% Identity
- iTF_00634272;
- 80% Identity
- -