Snon023792.1
Basic Information
- Insect
- Sesamia nonagrioides
- Gene Symbol
- -
- Assembly
- GCA_017933935.1
- Location
- JADWQK010001182.1:2627618-2629177[+]
Transcription Factor Domain
- TF Family
- HTH
- Domain
- HTH_psq domain
- PFAM
- PF05225
- TF Group
- Helix-turn-helix
- Description
- This DNA-binding motif is found in four copies in the pipsqueak protein of Drosophila melanogaster [1]. In pipsqueak this domain binds to GAGA sequence [1].
- Hmmscan Out
-
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc 1 1 2.5e-13 1.2e-10 42.5 0.1 2 37 16 51 15 60 0.90
Sequence Information
- Coding Sequence
- aTGGTTCGAACCTATGTTAGAAAAACTGACCAAGGTCAGTGGTCTCAGGAAGATATGAGAAAAGCTGCAGAAAAAGTTCTAACTAAACAAATGACTATACGAAAGGCAGCTGGGAAGTATAATGTGCCTTATACCAGTTTGCAGAGAAGAGTTACTCTCTCCCGGGGTACTCTCAAGAATCGAGGCGGTCAACAAACAATGGACAAGGACATTGAAGATAAATTTTCTACTCGATTGTTACATTTAGCTGGTCGTGGCTTCGGCATAACTCCAAAACGCGTTCGTAAGTACGCTTTTTCTTTTGCCGAACGTCTGAATATAAAGCATAACTTCAACACCGAAGTTCGTATCGCCGGAGAAGATTGGTTTCATCGCTTTATGAAAAGAAACCCACACTTGAGTATTCGCAAACCAGAGGGGCTGTCCAGAGCAAGGATTAATGGTATGAAGAAGGAAATAGTTGCAGAATTTTTCGAAGCTTTAGCTAAAGTGGTGGATGATAACGACTTGAGAGGAAAACCAGAATGCATTTACAACATGGACGAAACTGGGATCCCACTTAATAACCTTCCGCCTAATATTATAGCACAGAAAGGATCAAAAGATGTGGTTAGTATGACGAGTGTGGAAAGAGGTCAAAATGTGACTGTTATAGCCTCTATGAATGCTGCAGGGCAGTACATTCCACCGTTTGTACTTTTTAAAGGCGTGCGCAAACGCGATGATTTTATGTTGGGAATGCCTTCAGGTACAGAAATTGCCATGACAGAGAAGGGCTGGATCACAGAAGAAGCATTCAAGTTATGGCTGCAACATTTCAATAGATACCGGACTCAGggaaaagtaattttaattttagacgGTCATTCTTCTCATAGAAGCTTTGATGTGGCTGATTGGTGTGAAGCTATGGACATTGAACTTGTGCTGCTTCCTGCGCATACATCACATGCCCTCCAACCACTGGATGTTTCTTTCTTCAAACCACTCAAAACCTACTATAACCAACATGCAACAGCATGCCAACATGCACACCCATACCAGGGAATAACCAAAGTTGCGTTTGGTGGTTTGTTAAAACAAGCTTGGAACCAATCAGCAACAGTTGGGAATGCAGCCAAAGGTTTTGAGAAGACAGGAATATTTCCTCTTAATCCCAATGTAATCCCAGAACATAAGTTCATTGGGGATACTATGGACCATCTTGACTCAGTTGAAGCTAACAGTCTAGATCCTTCCACGAGTGCTCAACCAGCTCCTTCCACGAGTGCTCAACCAGCTCCTTCCACGAGTGCTCAACAAGCTACCATTCCACAAGAGGCAGAACAACAGCAAAACCAGATCGAGAATGCCATGAAAGAAATAATTCCTTCTCCACTGAAGAGCCCTGTAGTAACCAAAAAACCCCGCCAGGTTACTAAACCAATTTTACATTTAACTTCACCACAAAGCATGGACATTCTTCGTCTAAAAGACTCCAAGAAAAAAGctgaaaaacaaatgaataaatCTAAAGTAGAAGGAAAAGCAAAAGGCAAAGAAAATACGACGGTTAAGTAG
- Protein Sequence
- MVRTYVRKTDQGQWSQEDMRKAAEKVLTKQMTIRKAAGKYNVPYTSLQRRVTLSRGTLKNRGGQQTMDKDIEDKFSTRLLHLAGRGFGITPKRVRKYAFSFAERLNIKHNFNTEVRIAGEDWFHRFMKRNPHLSIRKPEGLSRARINGMKKEIVAEFFEALAKVVDDNDLRGKPECIYNMDETGIPLNNLPPNIIAQKGSKDVVSMTSVERGQNVTVIASMNAAGQYIPPFVLFKGVRKRDDFMLGMPSGTEIAMTEKGWITEEAFKLWLQHFNRYRTQGKVILILDGHSSHRSFDVADWCEAMDIELVLLPAHTSHALQPLDVSFFKPLKTYYNQHATACQHAHPYQGITKVAFGGLLKQAWNQSATVGNAAKGFEKTGIFPLNPNVIPEHKFIGDTMDHLDSVEANSLDPSTSAQPAPSTSAQPAPSTSAQQATIPQEAEQQQNQIENAMKEIIPSPLKSPVVTKKPRQVTKPILHLTSPQSMDILRLKDSKKKAEKQMNKSKVEGKAKGKENTTVK*
Similar Transcription Factors
Sequence clustering based on sequence similarity using MMseqs2
- 100% Identity
- iTF_01339949;
- 90% Identity
- iTF_01264335; iTF_00686266; iTF_00686263; iTF_00686264; iTF_00686265; iTF_00737403; iTF_00737404; iTF_00737405; iTF_00737399; iTF_00737400; iTF_00737402; iTF_01339956; iTF_01339955; iTF_00913535; iTF_00913534;
- 80% Identity
- -