Basic Information

Insect: Lomographa bimaculata
Gene Symbol: -
Assembly: GCA_948107665.1
Location: OX403584.1:7535988-7551804[+]

Transcription Factor Domain

TF Family: HTH
Domain: HTH_psq domain
PFAM: PF05225
TF Group: Helix-turn-helix
Description: This DNA-binding motif is found in four copies in the pipsqueak protein of Drosophila melanogaster [1]. In pipsqueak this domain binds to GAGA sequence [1].
Hmmscan Out: # of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc

1 1 7e-13 4.4e-10 39.5 0.1 2 37 16 51 15 58 0.94

#	of	c-Evalue	i-Evalue	score	bias	hmm coord from	hmm coord to	ali coord from	ali coord to	env coord from	env coord to	acc
1	1	7e-13	4.4e-10	39.5	0.1	2	37	16	51	15	58	0.94

Sequence Information

Coding Sequence: ATGGTGCGAACCTATGTTAGAAAAACTGACCAAGGTCAGTGGTCTCAGGAAGATATGAGAAAAGCTGCAGAAAAAGTTCTGAAAAAACAACTGACTATACGAAAGGCAGCAGAGAAATATAATGTGCCTTATACCAGTTTGCAGAGAAGAGTTACTTTCTCCCGGGGTGCTACCAAGAATCGAGGCGGTCAACAAATAATGGACAAGGGAATTGAAGATACATTTTCTGATCGATTGTTACATTTAGCTGGTCGTGGCTTCGGCATAACTCCAAAACGCGTTCGTAAGTACGCTTTTTCTTTTGTCGAACGTCTGAATGTAAAGCATAACTTCAACACCGAAACTCGTATCGCCGGAGAAGATTGGTTTCATCGCTTCATGAAAAGAAACCCACACTTGAGTATTCGCAAACCAGAAGGGCTGTCCAGAGCAAGGATTAATGGTATGAAGAAGGAAATAGTTGCAGAATTTTTCGAAGCTTTAGCTAAAGTGGTGGACGATAACGACTTGAGAGGAAAACCTGAATGTATTTACAATATGGACGAAACTGGAATCCCACTTAATAACCGTCCGCCTAATATTATAGCACAGAAAGGATCAAAAGATGTGGTTAGTATGACGAGTGTGGAAAGAGGTCAAAATGTGACTGTTTTAGCCTGCATGAATGCTGCAGGGCAGTACATTCCACCGTTTGTACTTTTTAAAGGCGTGCGCAAACGCGATGATTTCATGTTGGGAATGCCTTCGGGTACAGAAATTGCCATGACAGAGAAGGGCTGGATCACAGAAGAAGCATTCAAGCTATGGCTGCAACATTTCAATAGATACCGGACTCAGGGAAAAGTAATTTTAATTTTGGACGGTCATTCATCTCATAGAAGCTTTGATGTGGTTGATTGGTGTGAAGCTATGGACATTGAACTTGTGCTGCTTCCTGCACATACATCACATGCCCTCCAACCACTGGATGTTTCTTTCTTCAAACCACTCAAAACTTACTATAACCAACATGCAACAGCATGGCAACATGCACACCCACACCAGGGAATAACCAAAGTTGCGTTTGGTGGGCTGTTAAAACAAGCTTGGAACCAATCTGCAACAGTTGGCAATGCAGCCAAAGGTTTTGAGAAGACAGGAATATTTCCTCTTAATCCCAATGTAATCCCAGAACATAAGTTCATTGGGGATACTGTGGACCATCTTGACTCAGTTGAAGCTAATAGCCTAGTTCCTTCCACGAGTGCTAAACCAGCTCCTTCCACGAGTACTCAACAAGCTATCATTCCACAAGAGGCAGAACAACAGCAAAACCAGACCGAGAATGCCATGAAAGAAATAATTCCTTCTCCACTGAAGGGCCCTGTAGTAACTAAAAAACCTCGCCAGGTTACTAAACCAATTTTACATTTAACTTCACCACAAAGCATGGACATTCTTCGTCTAAAAGACTCCAAGAAAAAAGCTGAAACAGAAAAGAAGAAATCTATAGTAGAAGGAAAAGCAAAAAGCAAAGAGAATACGACGGTTAAGAAGAAGAATAAAGCTACACCTGGACTGAAACGCAAGGCGGCGGAGTCTGTCGGCACGTGCCAGTTTCAGGGTTCAGGTGTCATAGTGAACGGTCGCAGGCGGCGCTGGGCGAAGCTCCAGTTTCAAAGGGGCCGCCAGGCGGGGATGGAGCTGATACTTGTCCTCGGCAGCTCCCGTTACGATGCGGTCGCTCGTTTTAGTACCGCGTAA
Protein Sequence: MVRTYVRKTDQGQWSQEDMRKAAEKVLKKQLTIRKAAEKYNVPYTSLQRRVTFSRGATKNRGGQQIMDKGIEDTFSDRLLHLAGRGFGITPKRVRKYAFSFVERLNVKHNFNTETRIAGEDWFHRFMKRNPHLSIRKPEGLSRARINGMKKEIVAEFFEALAKVVDDNDLRGKPECIYNMDETGIPLNNRPPNIIAQKGSKDVVSMTSVERGQNVTVLACMNAAGQYIPPFVLFKGVRKRDDFMLGMPSGTEIAMTEKGWITEEAFKLWLQHFNRYRTQGKVILILDGHSSHRSFDVVDWCEAMDIELVLLPAHTSHALQPLDVSFFKPLKTYYNQHATAWQHAHPHQGITKVAFGGLLKQAWNQSATVGNAAKGFEKTGIFPLNPNVIPEHKFIGDTVDHLDSVEANSLVPSTSAKPAPSTSTQQAIIPQEAEQQQNQTENAMKEIIPSPLKGPVVTKKPRQVTKPILHLTSPQSMDILRLKDSKKKAETEKKKSIVEGKAKSKENTTVKKKNKATPGLKRKAAESVGTCQFQGSGVIVNGRRRRWAKLQFQRGRQAGMELILVLGSSRYDAVARFSTA

Similar Transcription Factors

Sequence clustering based on sequence similarity using MMseqs2

100% Identity: iTF_01339949;
90% Identity: iTF_01339950;
80% Identity: iTF_00913534;