Snon020564.1
Basic Information
- Insect
- Sesamia nonagrioides
- Gene Symbol
- -
- Assembly
- GCA_017933935.1
- Location
- JADWQK010001029.1:761128-761625[-]
Transcription Factor Domain
- TF Family
- HTH
- Domain
- HTH_psq domain
- PFAM
- PF05225
- TF Group
- Helix-turn-helix
- Description
- This DNA-binding motif is found in four copies in the pipsqueak protein of Drosophila melanogaster [1]. In pipsqueak this domain binds to GAGA sequence [1].
- Hmmscan Out
-
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc 1 1 1.6e-13 7.8e-11 43.1 0.1 2 37 16 52 15 58 0.89
Sequence Information
- Coding Sequence
- ATGGTCAGAAGATACGAAAGAATGAGTGGACGCCAGTCCTGGAATGAAGATGACATGGCTAAGGCTGTCGCAGCGGTGGTATCGGGTAAGATGGGGTACAAGCTGGCCGCCAGGACGTTCCACATACCTCGCTCAACCCTCCAAAGACGCGCAAGCAAGATAAGGTACCAGCAACCTGACGACCCCAAACCTTTAATGGGCCACTACCGGCGGGTGTTCACAGATAGTCAAGAGAAAGACCTGGTTGGATACATAAAAAGTATGGAGAAGTATTTTATGGGAGTCTCCAGGCGAGATATTCGAGAACTAGCTTTCCAATACGCAGAAGACAACAATCTGAATCATCCATTTGACGTCAACACCAGAATGGCAGGCGAAGACTGGGTCAGGAACTTCTTGAAGAGGAATCCTGAACTCCTGGATAAGTCAGATCACGAAGTCGCCATGGAGCCCGTGAACTTTGACCAGTTCTATCACTTTATGTGTCAGCTATCATGA
- Protein Sequence
- MVRRYERMSGRQSWNEDDMAKAVAAVVSGKMGYKLAARTFHIPRSTLQRRASKIRYQQPDDPKPLMGHYRRVFTDSQEKDLVGYIKSMEKYFMGVSRRDIRELAFQYAEDNNLNHPFDVNTRMAGEDWVRNFLKRNPELLDKSDHEVAMEPVNFDQFYHFMCQLS*
Similar Transcription Factors
Sequence clustering based on sequence similarity using MMseqs2
- 100% Identity
- iTF_00786686;
- 90% Identity
- iTF_00408320;
- 80% Identity
- iTF_01525859; iTF_00036548; iTF_01092996; iTF_00124166; iTF_01093958; iTF_01094824; iTF_00037705; iTF_00622729; iTF_00924521; iTF_00726218; iTF_00363948; iTF_00071309; iTF_01338509; iTF_00121326; iTF_00237390; iTF_00448942; iTF_00172655; iTF_00758063; iTF_00745552; iTF_00123281; iTF_01440915; iTF_00147220; iTF_00906038; iTF_00120410; iTF_00831098; iTF_00907802; iTF_01246747; iTF_00375100; iTF_00906975; iTF_01526943; iTF_00038624;