Ctra009504.1
Basic Information
- Insect
- Cosmia trapezina
- Gene Symbol
- -
- Assembly
- GCA_905163495.1
- Location
- LR991023.1:23710379-23710876[+]
Transcription Factor Domain
- TF Family
- HTH
- Domain
- HTH_psq domain
- PFAM
- PF05225
- TF Group
- Helix-turn-helix
- Description
- This DNA-binding motif is found in four copies in the pipsqueak protein of Drosophila melanogaster [1]. In pipsqueak this domain binds to GAGA sequence [1].
- Hmmscan Out
-
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc 1 1 9.5e-14 7.1e-11 43.1 0.1 2 37 16 52 15 58 0.89
Sequence Information
- Coding Sequence
- ATGGTCAGAAGATACGAAAGAATGAGTGGACGCCAGTCCTGGAACGAAGACGACATGGCCAAGGCTGTCGCAGCGGTGGTGTCAGGTAAGATGGGCTACAAGCTGGCCGCCAGGACCTTCCACATACCTCGCTCAACCCTCCAAAGACGCGCTAGCAAGATAAGGTACCAGCAACCTGACGACCCCAAACCTTTAATGGGCCACTACCGGCGAGTATTCACAGATAGCCAAGAGAAAGACCTGGTTggatacataaaaagtatggaGAAGTATTTTATGGGAGTCTCCAGGCGTGACATTCGGGAGCTGGCCTTCCAATACGCAGAAGACAACAATTTGAATCATCCATTTGATGTCAACACCAGAATGGCAGGCGAAGACTGGGTCAGGAATTTCCTGAAGAGGAATCCTGAACTCCTGGACAAGTCAGACCACGAGGTTGCCATGGAGCCCGTGAACTTTGACCAGTTCTATCACTTTATGTGCCAGTTATCATGA
- Protein Sequence
- MVRRYERMSGRQSWNEDDMAKAVAAVVSGKMGYKLAARTFHIPRSTLQRRASKIRYQQPDDPKPLMGHYRRVFTDSQEKDLVGYIKSMEKYFMGVSRRDIRELAFQYAEDNNLNHPFDVNTRMAGEDWVRNFLKRNPELLDKSDHEVAMEPVNFDQFYHFMCQLS*
Similar Transcription Factors
Sequence clustering based on sequence similarity using MMseqs2
- 100% Identity
- iTF_00786686;
- 90% Identity
- iTF_00408320;
- 80% Identity
- iTF_01339948;