Sgrm010050.1
Basic Information
- Insect
- Schizaphis graminum
- Gene Symbol
- PAXBP1
- Assembly
- GCA_003264975.1
- Location
- QEWZ01007483.1:451787-458301[-]
Transcription Factor Domain
- TF Family
- GCFC
- Domain
- GCFC domain
- PFAM
- PF07842
- TF Group
- Unclassified Structure
- Description
- This entry describes a domain found in a number of GC-rich sequence DNA-binding factor proteins and homologues [4, 5], as well as in a number of other proteins including Tuftelin-interacting protein 11 [1]. While the function of the domain is unknown, some of the proteins it is found in are reported to be involved in pre-mRNA splicing [1, 2]. This domain is also found in Sip1, a septin interacting protein [3].
- Hmmscan Out
-
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc 1 2 0.16 2e+03 -1.4 0.0 54 88 338 368 331 393 0.75 2 2 1.2e-28 1.6e-24 87.5 5.8 4 272 535 744 532 746 0.91
Sequence Information
- Coding Sequence
- ATGGCTATGCAATTTAGGAAGCCTAAACGAAACCTACGTGTTAGGGATTCTGACGGTCTTCATGACAATGAAAATGAAGAAAAAGTGGATATGGATACAGTACTAAAACTTCCAAAACCACAAAAAGAAAAGACAACAAAGAAAGTTAACACTTTGAGCTTTGGCGATGAGTTAAATGAATgtGATGATGGCgaagaatttaaagttaaaaaatcatcatatagtaaaaaaattaaaaagcaaatgaataaagaaaaaatgggTAGAGATAAAGTTGAAAATGgcaaaaaatcaaaagttattcCTGATACAATAAAATCTATTGTTGATGAAAAACCAACACatcttaatTCCGAACCTGTTGAAAAAGAAATAATGCTTACAGGCCGAGCTGCTGAAATGGCCGGCTATGTATCATCAGATGAAGAACCTGATTTATACAGTTCATCATCTCATAGATTTTCTAATCCTGaccaagttaaaatattattaaaaaAGGGACAAATTCCTGATGCAGCATTAATTCATGCTGCTCGAAAACGAAGACAACAAGCACGTGATTTGGGAGAAGATTTTATACCAATATCATCACAATCTCATAGtgaatcaaaagttgataatgAACAAATGACTGGTCGTCGTTTAACACGAGAAGAAGATGAATTAGAAGATAGTGATGATGATGGTATTATTGTTATGTCTGGAATTGTTAGTCAAGCTGAAGATCGTAAAAAAAGTTTACATACTTCAATGGcggatCACACTAACAATACTGAGTTTGAAGATCCTGATGAACTTGATGAAGATAATGATTGGGAAACTCAACAAATAAGAAAAGCAGTAACAGGTTCACAGTTAGCTGCTGCACAACAGGAATCAGCAGGCATGGCTACTTTATACAACAATATGGTCATTCAAGAGCAAGCTATGATGCCAATATTAATGAATCAAAAACCTCGATTCTCCGATTCATATGCTCCACAAGGATTGATATCTACAATGAACCCAGatgatatcataaataaaactaaagaaATattgAATGAGCTGAAAGAAAATCAGAATCCAGatcagaaatattttgaagataTGATAAACGAAATACCAGAGATTAAGAATAGAattgaaatgttaaaaattaatgttccTGAGTTGGATGATTGTTTTCAGTTTTATCAAGATTTGCGTGGGTACGTCACTGATCTGGTAGAATGTCTTGATGAAAAGattcctATACTTGTGGGATTGGAACAACGTTTATCTAAGATGTATGAAAAAAGACGTACAGTTTTGGTAGCCAGGCGTAGACAAGATGTTCGAGATCAAGCGGAAGAATCTTCAActaataAATTAGGAACACCAACAACACATACAAGATCTGAAGAACAGCAAAGAAGAGCTGCAGAGCGTGAAGGTCGTCGTATCAGACGTATGAGAATGAGAGAGATTAAAGCAATAAGTAAACATGCAGACGGAATGTCTAGTGATGAAGAAGTTCCTGAAACAGATGCGTCAGCATTTAGAAatcaattagaaCTTATTAAAAGTGACTCAAACATGTTATTGGACGATGTTCTTGAGGAATTTGCATCGGTTGATTTAGTGTTAAAACATATGTTAGAATGGAAAAATAAGTATTTGGATAGCTACATTGAAGCATATGTTAATGTGTGTTTACCCAAGTTAGTGGGACCCTTTGTTCGTATAGAAATGCTTACATGGAATCCATTAGAGGATGATCTGAAGTTTGAAGATATGTTTTGGTATAAAAGTATGCAAAAGTATACAATGAAAGGAAATAATAGTATTGATCAGTTGACAAAAGATGTTGATTTAGAACTAATCCccaaaataatagaaaaagtcGTGCTCATTAAAATTGATCaaatggtTACAAGCCAATGGGATCCATTGTCatcaaaacaaacaaaacataTCTGTAATATTGTTAAGCATATACTGGATGTGTATCCAACTATTGATCCAGACAGTAAATTATTGATGATGTTGTTGAACAATTTAGTGGACAGAATACGAGATGCTGTCgattatgatgtatttattcCAATATCGTCTAGACAAGTAATGAATACTGGTcgtatgaatgtattttttcaaaGACAGTTTAACATGGCTGTAAAATTATTAGGAAATATTTTGAGTTGGCATCGAATTATTGAAGATGCTGTGTTAATAGATTTAGCCATAAATCAAATACTTAACAGATATTTGCTAACATCTGTTCGGACATTACAGCCTCTAGAagctattttgaaaattacaatgaTTGCTCGTATGCTACCTAATTCATGGTTGTCATATGGAAACACTACCCCTAAAGAATTAACACCATTTTTAAACCAGTCAAAATTAGTTTCAATGGAAATAGATAAGTCACATCCTCAGGCAAAacTTGCCTTGGATAAACTCAATGAAGTCCTCAGACTATGA
- Protein Sequence
- MAMQFRKPKRNLRVRDSDGLHDNENEEKVDMDTVLKLPKPQKEKTTKKVNTLSFGDELNECDDGEEFKVKKSSYSKKIKKQMNKEKMGRDKVENGKKSKVIPDTIKSIVDEKPTHLNSEPVEKEIMLTGRAAEMAGYVSSDEEPDLYSSSSHRFSNPDQVKILLKKGQIPDAALIHAARKRRQQARDLGEDFIPISSQSHSESKVDNEQMTGRRLTREEDELEDSDDDGIIVMSGIVSQAEDRKKSLHTSMADHTNNTEFEDPDELDEDNDWETQQIRKAVTGSQLAAAQQESAGMATLYNNMVIQEQAMMPILMNQKPRFSDSYAPQGLISTMNPDDIINKTKEILNELKENQNPDQKYFEDMINEIPEIKNRIEMLKINVPELDDCFQFYQDLRGYVTDLVECLDEKIPILVGLEQRLSKMYEKRRTVLVARRRQDVRDQAEESSTNKLGTPTTHTRSEEQQRRAAEREGRRIRRMRMREIKAISKHADGMSSDEEVPETDASAFRNQLELIKSDSNMLLDDVLEEFASVDLVLKHMLEWKNKYLDSYIEAYVNVCLPKLVGPFVRIEMLTWNPLEDDLKFEDMFWYKSMQKYTMKGNNSIDQLTKDVDLELIPKIIEKVVLIKIDQMVTSQWDPLSSKQTKHICNIVKHILDVYPTIDPDSKLLMMLLNNLVDRIRDAVDYDVFIPISSRQVMNTGRMNVFFQRQFNMAVKLLGNILSWHRIIEDAVLIDLAINQILNRYLLTSVRTLQPLEAILKITMIARMLPNSWLSYGNTTPKELTPFLNQSKLVSMEIDKSHPQAKLALDKLNEVLRL
Similar Transcription Factors
Sequence clustering based on sequence similarity using MMseqs2
- 100% Identity
- iTF_01499641;
- 90% Identity
- iTF_00940493;
- 80% Identity
- -