Stum005910.1
Basic Information
- Insect
- Scaptomyza tumidula
- Gene Symbol
- retn
- Assembly
- GCA_035044465.1
- Location
- JAWNNW010000444.1:12957340-12985828[+]
Transcription Factor Domain
- TF Family
- ARID
- Domain
- ARID domain
- PFAM
- PF01388
- TF Group
- Helix-turn-helix
- Description
- This domain is know as ARID for AT-Rich Interaction Domain [2], and also known as the BRIGHT domain [1].
- Hmmscan Out
-
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc 1 2 4.3e-26 9.4e-23 80.4 0.0 2 89 316 401 315 401 0.96 2 2 2.5 5.4e+03 -2.2 0.1 20 41 562 592 542 605 0.53
Sequence Information
- Coding Sequence
- ATGCAACTCCGAGTGCATCCGACTATGGATTGTAGCGGCCgttcaaataacaatattgaGCGAGATTCCGATTTGGGTGACGATTTgTCTCACGGTGATCGTACGGATGACGAGATGCGCGACTGCGATTCCGTTGACGGTGAACATCATCAGTTAAGCGCCAAGGCAGCAATTGCAGCCCGTCTCAGTCACACAGTTgccggcggcggcggcgtcgtCAACTTTGCCAGTCCCGAGCAACAAACTGATTTGCCACTCAGccatcatcatcaattgCCACCGAATCATCCGCTTAATGCCCTGGGCAGCTTTATGGGCATCGGCGGTCTACACAGCATTCCAAATCTCCAACACAGTGATGTCCTTGAGAAGCTCAAGATGCAAGTGCGCGACATGAAAGTTGGCCTTATGGAACAGGATTATGCCGCGGCGGCACATGCAGCAGCCTTCGGAGCTAACATGCTGCCCACAACGATCGGCACGGCCTTTCCACTGCCACACAACtcggcagcagccgcagcagcagcagccgcagcggcagcagcagcagctgcatccTTTAACCAcaccaatgccaatgccaatgcgaatgcgaatgcgaatgcagTGCCACCAAACGGCAGCAATGGCGCCAATGGCTACAATGGAGGAGGTCACACGGGAGTTGGATCCAATGCGGCTAACAACAATTCAGCTAATAGTGGTGGAACAGTTGGAGGAAATGGAggtggcaataacaacaacaacaatggtcaTCCCTTTTCATTTGCATCACCAACAGCGCCAAGCAACACCAAAGAAGCGCGCCACTTTACAGCTAATTCCGCATCAAATTCATCGACGTCCAGCGAGGCATCCAATTCATCCCAACAGAATAATGGCTGGAGCTTTGAAGAGCAGTACAAACAAGTCAGACAGCTCTACGAAATCAATGATGATCCCAAGCGCAAGGAATTTCTTGatgatttgttttcatttatgcaAAAGCGAGGCACGCCTATCAATCGTTTGCCTATTATGGCCAAATCGGTGCTAGATCTATATGAGCTATATAATCTGGTGATAGCTCGCGGCGGCTTGGTCGATGTCATCAACAAGAAGCTGTGGCAGGAGATTATCAAGGGACTGCATCTGCCATCGAGCATAACAAGTGCAGCATTCACATTGCGTACACAATACATGAAGTATCTGTACCCTTACGAGTGCGAGAAGAAGAACCTGAGCACACCAGCTGAACTGCAAGCGGCCATTGATGGCAATCGTCGTGAAGGACGTCGTTCCAGCTACGGCCAATACGAAGCCATGCACAATCAGATGCCAATGACGCCAATATCGCGCCCACCGTTGCCTGGCGGAATGCAACAGATGTCGCCACTAGCGCTTGTCACAcatgctgccgctgccaacAATCAGCAGGCGCAGGCAgcggccgcagcagcagcagcacatcgACGATTGATGGGTGGACCGGCGTTCGGTCAAATGCCCAATTTGGTGACGCAAGAGATTGAGAATCGTATGATGGAATATCTGCAGCTCATACAGGCTaagaaggagcagcagcagcagcagcaacagcagaatgCGCCGGGATTGGGCGCTACACATccgcaccagcaacaacaacagcagcagcagcaacaacaatcgctgcatcatcatcaacagcaacaacaacaacagcagcaacggcaacgttCACAAAGTCCTGAGCTGAGCACTCGTGATGCGCTTAGTGCGCAGGTGGCGCTGTGGCATATGTACCACAATAGCAGTCCAACCGGTTCGGCGCACACCTCACCACAGCAACGCGAAGCTTTGAACCTCTCCGATTCGCCGCCAACACTGAATTTGAATCACATCAAACGCGAACGTGAACGCGATCCAACGCCAGAGCCCACAGATCTTGAGGAACCAGCACATCAGCCGCCGCCAGCCAAACGTGTGGGCAGCGGTCTAATGCCACCCGGTTTTCCCGCTAACTTCTACTTGAATCCACACAATATGgctgctgtggcagctgcCGCCGGTTTTCATCATCAGGCCGCCAACAATcatcaccatcagcagcagcagcaacaacagcaggatgCAGCATCTGAAGGGGAACCCGATGATGATTATGGCAATGGAGAGCACAATACCACCGGCAATTCATCGTCCCTTAACGATGATGGTGAGCCACAACAACTAAATGgacatcatcaccatcatcatcatcatcttcatcatgaTGATCACGATCACGATCATCATAGTCAACATCAGAATCATTTGGATAAATCGGATGATTCGGCCATTGAGAACTCACCCAgcacatcgacaacaacaacaacgacaacgacatcCCATCGTCATAGTTCGCCAGTTTCCACAAAGAAGAAGAGTagcgtcaacagcagcaacaacaacaacaataacaatagcaacaaaacgCAATCCTTAAATCCCAAGGAcaatgccaacagcagcactgGAATCGGAATCGGAAGTGGAGATGTCAAACTAAATCCACTCGATACGCTCAGTTTGCTTTCGGGCATGCAATTTCAAGTGGCACGCAATGGCATCAATGCAAATGGTGAACAGCAATTGGTTGTCAATCTCGAACTGAATGGCATTAAGTACACGGGTGTGTTGGtggcaacaactgctgcaacaacaacagcaacaacaacaacagcagcaacagcagtcagACCGGAGAAAGCGTTGCAGCAGGAGAAGTCAGAGTTGCCGACTGCAGCTGAGGAGTCAACAGTTGGATGCAACGAAGATGCGATGAAGCATGAAAACAGCCAGCAACTAAGCCAAAATGAGGCTATTGATGaggaatcaacaacaacaacaacaataacacaagaacaacaacatcatcagcaaacCGATGACATTGTTAATGGAACAGCgagtgttggtggtggtgttggtggggGTATTGGTTTAGGAGTTGGGCTAGGGGTTGGTTTAAGTGTGGTGGGTGCAAATCTGCTCAAAGATGCTGTGGTCAGTTCGTAG
- Protein Sequence
- MQLRVHPTMDCSGRSNNNIERDSDLGDDLSHGDRTDDEMRDCDSVDGEHHQLSAKAAIAARLSHTVAGGGGVVNFASPEQQTDLPLSHHHQLPPNHPLNALGSFMGIGGLHSIPNLQHSDVLEKLKMQVRDMKVGLMEQDYAAAAHAAAFGANMLPTTIGTAFPLPHNSAAAAAAAAAAAAAAAASFNHTNANANANANANAVPPNGSNGANGYNGGGHTGVGSNAANNNSANSGGTVGGNGGGNNNNNNGHPFSFASPTAPSNTKEARHFTANSASNSSTSSEASNSSQQNNGWSFEEQYKQVRQLYEINDDPKRKEFLDDLFSFMQKRGTPINRLPIMAKSVLDLYELYNLVIARGGLVDVINKKLWQEIIKGLHLPSSITSAAFTLRTQYMKYLYPYECEKKNLSTPAELQAAIDGNRREGRRSSYGQYEAMHNQMPMTPISRPPLPGGMQQMSPLALVTHAAAANNQQAQAAAAAAAAHRRLMGGPAFGQMPNLVTQEIENRMMEYLQLIQAKKEQQQQQQQQNAPGLGATHPHQQQQQQQQQQQSLHHHQQQQQQQQQRQRSQSPELSTRDALSAQVALWHMYHNSSPTGSAHTSPQQREALNLSDSPPTLNLNHIKRERERDPTPEPTDLEEPAHQPPPAKRVGSGLMPPGFPANFYLNPHNMAAVAAAAGFHHQAANNHHHQQQQQQQQDAASEGEPDDDYGNGEHNTTGNSSSLNDDGEPQQLNGHHHHHHHHLHHDDHDHDHHSQHQNHLDKSDDSAIENSPSTSTTTTTTTTSHRHSSPVSTKKKSSVNSSNNNNNNNSNKTQSLNPKDNANSSTGIGIGSGDVKLNPLDTLSLLSGMQFQVARNGINANGEQQLVVNLELNGIKYTGVLVATTAATTTATTTTAATAVRPEKALQQEKSELPTAAEESTVGCNEDAMKHENSQQLSQNEAIDEESTTTTTITQEQQHHQQTDDIVNGTASVGGGVGGGIGLGVGLGVGLSVVGANLLKDAVVSS
Similar Transcription Factors
Sequence clustering based on sequence similarity using MMseqs2
- 100% Identity
- iTF_01325445;
- 90% Identity
- iTF_01326946; iTF_01320973;
- 80% Identity
- -