Scyr012009.1
Basic Information
- Insect
- Scaptomyza cyrtandrae
- Gene Symbol
- retn
- Assembly
- GCA_035044605.1
- Location
- JAWNNS010000646.1:426826-458188[-]
Transcription Factor Domain
- TF Family
- ARID
- Domain
- ARID domain
- PFAM
- PF01388
- TF Group
- Helix-turn-helix
- Description
- This domain is know as ARID for AT-Rich Interaction Domain [2], and also known as the BRIGHT domain [1].
- Hmmscan Out
-
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc 1 2 3.7e-26 1e-22 80.4 0.0 2 89 314 399 313 399 0.96 2 2 2.2 5.8e+03 -2.2 0.1 20 41 557 587 537 600 0.53
Sequence Information
- Coding Sequence
- ATGCAACTCCGAGTGCATCCGACTATGGATTGTAGCGGCCGTTCAAATAACAATATTGAGCGAGATTCCGATTTGGGTGACGATTtgTCTCACGGTGATCGTACGGATGACGAGATGCGCGACTGCGATTCCGTTGACGGTGAACATCATCAGTTAAGCGCCAAGGCAGCAATTGCTGCCCGTCTCAGTCACACAGTTgccggtggcggcggcggcggcggcgtcaaCTTTGCCAGTCCCGAGCAACAAACTGATTTGCCACTTAGccatcatcatcaattgCCACCGAATCATCCGCTTAATGCCTTAGGCAGCTTTATGGGCATCGGCGGTCTACACAGCATTCCAAATCTCCAACACAGTGATGTCCTTGAGAAGCTCAAGATGCAAGTGCGCGACATGAAAGTTGGCCTTATGGAACAGGATTATGCCGCGGCGGCACATGCAGCAGCCTTCGGAGCAAACATGCTGCCCACAACGATCGGCACGGCCTTTCCACTGACACACAACTcggcagcagcggctgcagcagcggcagcagcagcagcagcggcagctgctgcatcCTTTAACCAcaccaatgccaatgccaatgcgaatgcgaatgcgaatgcagTGCCACCAAACGGCAGCAATGGCGCCAGCTACAATGGAGGAGGTCACACGGGAGTTGGATCAACAGTGGCTAACAACAATACAGCTAATAGTGGTGGAACAGGTGCAGGAAGTGgaggtggcaacaacaacaacaataacaatggtCATCCCTTTTCATTTGCATCACCAACAGCACCAAGCAACACCAAAGAAGCTAATTCCGCATCAAATTCATCGACGTCCAGCGAGGCATCCAATTCATCCCAACAGAATAATGGCTGGAGCTTTGAAGAGCAGTACAAACAAGTCAGACAGCTCTACGAAATCAATGATGATCCCAAGCGCAAGGAATTTCTTGatgatttgttttcatttatgcaaAAGCGAGgcACGCCCATTAATCGTTTGCCCATTATGGCCAAATCGGTGCTGGATCTATATGAGCTATATAATCTGGTGATAGCTCGCGGCGGCTTGGTCGATGTTATCAACAAAAAGCTGTGGCAAGAGATTATCAAGGGACTGCATCTGCCATCGAGCATAACAAGTGCAGCATTCACATTGCGTACACAATACATGAAGTATTTGTACCCTTACGAGTGCGAAAAGAAGAATCTGAGCACACCAGCTGAACTGCAAGCGGCCATTGATGGTAATCGTCGTGAAGGACGTCGTTCTAGCTACGGCCAATACGAAGCCATGCACAATCAGATGCCAATGACGCCAATATCGCGCCCACCGTTGCCTGGCGGAATGCAACAGATGTCGCCACTGGCGCTCGTCACACACGCAGCCGCTGCCAACAATCAGCAGGCGCAGGCAgcggccgcagcagcagcagcacatcgACGATTGATGGGTGGACCTGCGTTCGGTCAAATGCCCAATTTGGTGACGCAAGAGATTGAAAATCGTATGATGGAATATCTGCAGCTCATACAGGCTAagaaggagcagcagcagcagcagaatgcGCCTGGATTAGGCGCCACACAtccacaccagcaacaacaacagcagcagcagcaacaacaatcgcttcatcatcatcaacaacaacagcaacaacagcagcaaaggcaACGTTCACAAAGTCCTGAGCTGAGCACTCGTGATGCGCTGAGTGCGCAGGTGGCGCTGTGGCATATGTACCACAATAGCAGTCCAACCGGTTCGGCGCACACCTCACCACAGCAACGCGAAGCTTTGAACCTCTCCGATTCGCCGCCAACCTTGAATTTGAATCACATCAAACGCGAACGTGAACGCGATCCAACGCCAGAGCCCACAGATCTTGAGGAACCAGCACATCAGCCACCGCCAGCCAAACGTGTGGGCAGCGGCCTAATGCCACCCGGTTTTCCCGCTAACTTCTACTTGAATCCACACAATATGGCTGCTGTGGCAGCTGCCGCCGGTTTTCATCATCAGGCCGccaacaatcatcatcatcagcagcagcagcagcaacagcaggatgCAGCATCTGAAGGTGAACCCGACGATGATTATGGCAATGCAGAGCACAATACCACCGGCAATTCATCGTCCCTAAACGATGATGGTGAGCCACAACAACTAAATGgacatcatcaccatcataatcatcatcatcatcttcatcatgaTGATCACGATCACGATCACGATCATCATAGTCAACATCAAAATCATTTGGATAAATCGGATGATTCGGCCATTGAGAACTCACCCAGcacatcgacaacaacaacaacgacatccCATCGTCATAGTTCGCCAGTTTCCACAAAGAAGAAGAGTagcgtcaacagcaacagcagcaacaacaacaacagcaacaaaacgcaATCCTTAAATCCAAAGGACAATGGCAAAAGCAGCACTGGAATTGAAAGTGGAGACGTCAAACTAAATCCACTCGATACGCTCAGTTTGCTTTCGGGCATGCAATTTCAAGTGGCACGCAATGGCATCAATGCAAATGGTGAACAGCAATTGGTTGTCAATCTCGAACTGAATGGCATTAAGTACACAGGTGTGTTGGTGGCATCAACTGatgcaacaacgacagcaacaacagcagcaacagcagcagtgagACCGGATAAGGCGTTGCAGCTGGAAAAATCAGAGTTGCCGACTGCAGCTGAAGAGGCAACAGTTGGATGCAACGAAGATGCAATGAAGCATGAAAACAGCCAGGAACTAAGCCATAATGAGGCTATTGATGacgaatcaacaacaacaacaacagcaacaaaggaacaacagcaacatcatcagcaaaaCGATGACATTGTTAATGGAACAGCGAgtgttggtggtggcggtggtggtgggggaATCGGTTTAGGAGTTGGGCTAGGGGTTGGTTTAAGTGTGTTGGGTGCAAATCTGCTCAAAGATGCTGTGGTCAGTTCGTAG
- Protein Sequence
- MQLRVHPTMDCSGRSNNNIERDSDLGDDLSHGDRTDDEMRDCDSVDGEHHQLSAKAAIAARLSHTVAGGGGGGGVNFASPEQQTDLPLSHHHQLPPNHPLNALGSFMGIGGLHSIPNLQHSDVLEKLKMQVRDMKVGLMEQDYAAAAHAAAFGANMLPTTIGTAFPLTHNSAAAAAAAAAAAAAAAAASFNHTNANANANANANAVPPNGSNGASYNGGGHTGVGSTVANNNTANSGGTGAGSGGGNNNNNNNGHPFSFASPTAPSNTKEANSASNSSTSSEASNSSQQNNGWSFEEQYKQVRQLYEINDDPKRKEFLDDLFSFMQKRGTPINRLPIMAKSVLDLYELYNLVIARGGLVDVINKKLWQEIIKGLHLPSSITSAAFTLRTQYMKYLYPYECEKKNLSTPAELQAAIDGNRREGRRSSYGQYEAMHNQMPMTPISRPPLPGGMQQMSPLALVTHAAAANNQQAQAAAAAAAAHRRLMGGPAFGQMPNLVTQEIENRMMEYLQLIQAKKEQQQQQNAPGLGATHPHQQQQQQQQQQQSLHHHQQQQQQQQQRQRSQSPELSTRDALSAQVALWHMYHNSSPTGSAHTSPQQREALNLSDSPPTLNLNHIKRERERDPTPEPTDLEEPAHQPPPAKRVGSGLMPPGFPANFYLNPHNMAAVAAAAGFHHQAANNHHHQQQQQQQQDAASEGEPDDDYGNAEHNTTGNSSSLNDDGEPQQLNGHHHHHNHHHHLHHDDHDHDHDHHSQHQNHLDKSDDSAIENSPSTSTTTTTTSHRHSSPVSTKKKSSVNSNSSNNNNSNKTQSLNPKDNGKSSTGIESGDVKLNPLDTLSLLSGMQFQVARNGINANGEQQLVVNLELNGIKYTGVLVASTDATTTATTAATAAVRPDKALQLEKSELPTAAEEATVGCNEDAMKHENSQELSHNEAIDDESTTTTTATKEQQQHHQQNDDIVNGTASVGGGGGGGGIGLGVGLGVGLSVLGANLLKDAVVSS
Similar Transcription Factors
Sequence clustering based on sequence similarity using MMseqs2
- 100% Identity
- iTF_01325445;
- 90% Identity
- iTF_01327672;
- 80% Identity
- -