Sred002918.1
Basic Information
- Insect
- Scaptomyza reducta
- Gene Symbol
- retn
- Assembly
- GCA_035044485.1
- Location
- JAWNNV010000297.1:1330695-1348980[-]
Transcription Factor Domain
- TF Family
- ARID
- Domain
- ARID domain
- PFAM
- PF01388
- TF Group
- Helix-turn-helix
- Description
- This domain is know as ARID for AT-Rich Interaction Domain [2], and also known as the BRIGHT domain [1].
- Hmmscan Out
-
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc 1 2 5.2e-26 9e-23 80.4 0.0 2 89 307 392 306 392 0.96 2 2 3.4 5.9e+03 -2.3 0.2 20 39 554 580 528 594 0.51
Sequence Information
- Coding Sequence
- ATGAAGCCAACAACAGGCAAGCGTCCAATGCGAACAGCGATCAATGCGTCAATATGTGCCacaaagaagcagcagcaccagaagATGGTGATGGTTATGGTGATGTCTCACGGCGATCGTACGGATGACGAGATGCGCGACTGCGATTCCGTTGACGGTGAACATCATCAGTTAAGCGCCAAGGCAGCAATTGCTGCCCGTCTCAGTCACACAGTTGCCGGCGGCGGCGTCGTCAACTTTGCCAGTCCCGAACAGCAAACCGATTTACCACTCAGccatcatcatcaattgCCACCGAATCATCCGCTTAATGCCCTGGGCAGCTTTATGGGCATCGGCGGTCTACACAGCATTCCAAATCTCCAGCACAGTGATGTCCTTGAGAAGCTCAAGATGCAAGTGCGCGACATGAAAGTTGGCCTAATGGAACAGGACTATGCCGCGGCGGCACATGCAGCAGCCTTCGGAGCGAACATGCTGCCCACAACGATCGGCACGGCCTTTCCACTGCCACACAACTCGGCAGCggccgcagccgcagcggcggcggcagcagcagcagcagctgcatcctTTAACCACAataatgccaatgccaatgcgaatgcgaatgctgCAGTGCCGCCAACCGGCAGCAATGGCGCCAGTTACAATGGCGGAGCTAATAGTGGAGCAACAGGTGCAGGAggtggcaacggcaacagcaacaacaacaacaacaatggtcaTCCCTTTTCATTTGCATCACCGACAGCGCCAAGCAACACCAAAGAAGCGCGCCACTTTACAGCTAATTCCGCATCAAATTCATCGACGTCCAGCGAGGCATCCAATTCATCCCAACAGAATAATGGCTGGAGCTTTGAAGAGCAGTACAAACAAGTCAGACAGCTCTACGAAATCAATGATGATCCCAAGCGCAAGGAATTTCTTGAtgatttgttttcatttatgcaAAAGCGAGGCACGCCCATCAATCGTTTGCCCATTATGGCCAAATCGGTGCTGGATCTGTATGAGCTATATAATCTGGTGATAGCTCGCGGCGGCTTAGTCGATGTCATCAACAAGAAGCTCTGGCAGGAGATTATCAAGGGACTGCATCTGCCATCGAGCATAACAAGTGCGGCATTCACATTGCGTACACAATACATGAAGTATTTGTACCCTTACGAGTGCGAGAAGAAGAATCTGAGCACACCAGCTGAACTGCAGGCGGCCATTGATGGCAATCGTCGTGAAGGACGTCGTTCCAGCTATGGCCAATATGAGGCCATGCACAATCAGATGCCAATGACGCCAATATCGCGTCCACCGTTGCCTGGTGGAATGCAACAGATGTCGCCACTGGCGCTTGTCACACACGCTGCCGCCGCCAATAATCAGCAGGCGCAGGCAGCggccgccgcagcagcagcacatcgACGATTGATGGGCGGTCCGCCGTTTGGACAGATGCCCAATTTGGTGACGCAAGAGATTGAGAATCGTATGATGGAGTATCTGCAGCTCATACAGGCTAAgaaggagcaacagcagcagaatgCGCCAGGATTGGGAGCCACACATccgcaccagcaacagcagcagcaacaacaacaacaatcgctgCATCAtctccaacagcaacagcaacaacagcaacagcagcagcagcaacggcaacgttCACAAAGTCCTGAGCTGAGCACTCGTGATGCGCTGAGTGCGCAAGTCGCGCTTTGGCATATGTACCACAATAGCAGTCCAACCGGTTCGGCGCACACCTCACCACAGCAACGCGAAGCTTTGAACCTCTCCGATTCGCCGCCAACTTTGAATTTGAATCACATCAAACGCGAACGTGAACGCGATCCAACGCCAGAACCCACAGATCTTGAGGAACCAGCACACCAGCCGCCGCCAGCCAAACGTGTGGGCAGCGGCCTAATGCCGCCCGGTTTTCCCGCTAACTTCTACTTGAATCCACACAATATGGCTGCTGTGGCAGCTGCCGCCGGTTTTCATCATCAGGCCGCcaacaatcatcatcatcagcagcagcagcagcagcagcagcaacagcaggatgCAGCATCTGAAGGCGAGCCCGATGATGATTATGGCAATGGAGTGCACAATACCACCGGCAATTCATCGTCCCTGAACGATGATGGTGAGCCACAACAACTAAATGgacatcatcaccatcatcatcatcatctacaTGATGATCACGATCACGATCATCACAGTCAACATCAGAATCATTTGGATAAATCCGATGATTCGGCCATTGAGAACTCACCCAGcacatcgacaacaacaacaacaacgacatccCATCGTCACAGTTCGCCAGTGtccacaaagaagaagagtagcgtcaacagcaacaaaacacaatccTTGAATCTCAAGGAcgagggcaacaacaacaacagcagcagcactggaAGCGGAGATGTCAAACTAAATCCACTCGATGCGCTCAGTTTGCTTTCGGGCATGCAATTTCAAGTGGCACGCAATGGCATCAATGCAAATGGTGAACAGCAATTGGTTGTCAATCTCGAACTGAATGGCATTAAGTACACGGGTGTGTTGGTGgcatcaacagctgcaacaacaacaacaccaacagcaacaacaacaacagctgaagcAGCAGTCAGACCGGAGAAGgcgttgcagcagcagaagtCAGAGTTGCCGACTGCAGCTGAGGAGCCATTAGTTGGAATCAACGAAGATGCGATGAAGCATGAACACAGCCAGGAACTAAGCCAAAATGAGGCTATTGATGAggaatcaacaacaacacatgaacaacatcaacaacaacaacatccaaaCGATGACATTGTGAATGGAACAGCGAGTGTTGGTGGTGGGGGAATCGGTTTAGGAGTTGGGCTAGGGGTTGGGTTAAGTGTGGTGGGTGCAAGTCTGCTCAAAGATGCAGTGGTCAGTTCGTAG
- Protein Sequence
- MKPTTGKRPMRTAINASICATKKQQHQKMVMVMVMSHGDRTDDEMRDCDSVDGEHHQLSAKAAIAARLSHTVAGGGVVNFASPEQQTDLPLSHHHQLPPNHPLNALGSFMGIGGLHSIPNLQHSDVLEKLKMQVRDMKVGLMEQDYAAAAHAAAFGANMLPTTIGTAFPLPHNSAAAAAAAAAAAAAAAASFNHNNANANANANAAVPPTGSNGASYNGGANSGATGAGGGNGNSNNNNNNGHPFSFASPTAPSNTKEARHFTANSASNSSTSSEASNSSQQNNGWSFEEQYKQVRQLYEINDDPKRKEFLDDLFSFMQKRGTPINRLPIMAKSVLDLYELYNLVIARGGLVDVINKKLWQEIIKGLHLPSSITSAAFTLRTQYMKYLYPYECEKKNLSTPAELQAAIDGNRREGRRSSYGQYEAMHNQMPMTPISRPPLPGGMQQMSPLALVTHAAAANNQQAQAAAAAAAAHRRLMGGPPFGQMPNLVTQEIENRMMEYLQLIQAKKEQQQQNAPGLGATHPHQQQQQQQQQQSLHHLQQQQQQQQQQQQQRQRSQSPELSTRDALSAQVALWHMYHNSSPTGSAHTSPQQREALNLSDSPPTLNLNHIKRERERDPTPEPTDLEEPAHQPPPAKRVGSGLMPPGFPANFYLNPHNMAAVAAAAGFHHQAANNHHHQQQQQQQQQQQDAASEGEPDDDYGNGVHNTTGNSSSLNDDGEPQQLNGHHHHHHHHLHDDHDHDHHSQHQNHLDKSDDSAIENSPSTSTTTTTTTSHRHSSPVSTKKKSSVNSNKTQSLNLKDEGNNNNSSSTGSGDVKLNPLDALSLLSGMQFQVARNGINANGEQQLVVNLELNGIKYTGVLVASTAATTTTPTATTTTAEAAVRPEKALQQQKSELPTAAEEPLVGINEDAMKHEHSQELSQNEAIDEESTTTHEQHQQQQHPNDDIVNGTASVGGGGIGLGVGLGVGLSVVGASLLKDAVVSS
Similar Transcription Factors
Sequence clustering based on sequence similarity using MMseqs2
- 100% Identity
- iTF_01325445;
- 90% Identity
- iTF_01327672;
- 80% Identity
- -