Spar006432.2
Basic Information
- Insect
- Scaptomyza parva
- Gene Symbol
- retn
- Assembly
- GCA_035044645.1
- Location
- JAWNNT010000090.1:14531813-14561741[+]
Transcription Factor Domain
- TF Family
- ARID
- Domain
- ARID domain
- PFAM
- PF01388
- TF Group
- Helix-turn-helix
- Description
- This domain is know as ARID for AT-Rich Interaction Domain [2], and also known as the BRIGHT domain [1].
- Hmmscan Out
-
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc 1 2 5e-26 9.7e-23 80.3 0.0 2 89 323 408 322 408 0.96 2 2 3 5.8e+03 -2.3 0.3 13 13 569 569 521 614 0.60
Sequence Information
- Coding Sequence
- ATGGATTGTAGCGGCCGTTCAAATAACAATATTGAGCGTGATTCCGATTTGGGTGACGATTTGTCTCACGGTGATCGTACGGATGACGAGATGCGCGACTGCGATTCTGTTGACGGTGAACATCATCAGTTAAGCGCCAAGGCGGCAATTGCAGCTCGTCTCAGTCACACAGTTgccggcggcggcgtcggcgtcggtgGCAGCGTTGGCGGTGGCATCAACTTTGCCAGTCCCGAGCAGCAAACAGATCTGCCACTAAGccatcatcatcaattgCCACCAAATCATCCGCTTAATGCTCTGGGCAGCTTTATGGGCATCGGCGGACTTCACAGCATTCCAAATCTGCAACACAGTGATGTCCTTGAGAAGCTTAAGATGCAAGTACGCGACATGAAAGTTGGACTAATGGAACAGGATTATGCAGCGGCAGCACATGCAGCAGCATTTGGGGCCAACATGTTGCCGACAACAATCAATGCGGCCTTTCCACTGCCACACAActcggcagcggcagcagcagcagcagcggcggcagcagcagcggcagctgcatCCTTTGGCCATAataccaatgccaatgccaattccAATGCCAATGCATTGCCGCCAACCAGCAGCAATGGCGCCACTTACAATGGAGGAGCTGGACACAATGTTGGGGCAACTtccgtcaacaacaacaacaacaacaatgcagcGAATAGTGGTGCAAGCGGTGGTGGAGCTGTTGCAAGTGGAGGTGGCAACAGTtccagtaacaacaataatggtCATCCCTTTTCATTTGCATCACCAACAGCGCCAAGCAACACCAAAGAAGCGCGCCACTTTACAGCTAATTCCGCATCAAATTCATCGACGTCCAGCGAAGCTTCGAATTCATCCCAACAGAATAATGGCTGGAGCTTTGAAGAGCAGTACAAACAAGTCAGACAGCTCTATGAAATCAATGATGATCCCAAGCGCAAGGAGTTTCTTgatgatttattttcatttatgcaAAAGCGAGGCACGCCCATTAATCGTTTGCCCATTATGGCCAAATCGGTACTGGATCTATATGAGCTATATAATCTGGTGATAGCTCGCGGCGGCCTCGTCGATGTCATCAACAAGAAACTGTGGCAGGAGATTATCAAGGGACTGCATCTGCCATCGAGCATAACAAGTGCAGCATTCACATTGCGCACACAATACATGAAGTATCTGTACCCCTATGAGTGCGAGAAGAAGAATCTGAGCACACCGGCAGAACTGCAAGCGGCCATTGATGGTAATCGTCGTGAAGGACGTCGTTCCAGCTATGGTCAATATGAAGCCATGCACAATCAGATGCCAATGGCGCCCATTTCGCGACCACCGTTGCCGGGTGGAATGCAACAGATGTCGCCACTGGCGCTGGTCACACATGCAGCGGCTGCCAACAATCAGCAGGCGCAGGCAgcggccgcagcagcagcagcacatcGACGATTGATGGGTGGCCCGGCATTTGGTCAGATGCCCAATTTGATGACGCAAGAGATTGAGAATCGTATGATGGAGTATCTGCAACTCATTCAGGCCAAgaaggaacagcaacaacaacaacagcagcagcaacagaataCGCCCGTATTGGGCGCCACACATccgcaccagcagcaacaacaacaacaaacgctgcatcatcaccaacagcaacaacaacaacagcagcagcagcaacaacagcaaaggcaacgCTCACAAAGTCCTGAGCTGAGCACTCGTGATGCGCTCAGTGCACAGGTGGCGCTGTGGCATATGTACCACAATAGCAGTCCAACCGGTTCGGCGCACACCTCACCACAGCAACGcGAAGCACTCAACCTGTCCGATTCGCCACCCACTTTGAATCTGAATCACATTAAACGGGAACGTGAACGCGATCCAACGCCAGAGCCCACAGATCTTGAGGAACCAGCACATCAGCCACCGCCAGCCAAACGTGTGGGCAGCGGCCTAATGCCACCTGGTTTTCCCGCCAACTTCTACTTGAATCCACACAATATGGCCGCTGTGGCAGCTGCCGCCGGCTTCCATCATCaggccaccgccgccgccgccaacaatcatcatcatcatcagcagcatcaacagcagcaccagcaccaggaTGCAGCATCTGAGGGTGAACCAGATGATGAGTATGATAATGGAGAGCACAATACCACCGGCAATTCGTCGTCCCTCAACGATGATAATGAGCCACAGCAACTGAAtggacatcatcatcatcctcttcatcatcatcatcatcttcatcattcacacgatgatgatgttgatcatgatagtcatcatcatcatcatcatcagaatcATTTGGACAAATCCGATGATTCGGCCATTGAAAACTCACCGAgcacatcgacaacaacaacaacaacgcaaacaTCATCCCATCGTAACAGTTCGCCAGTATCCACCAAAAAGAAGAGTagcgtcaacagcaacaacaacaacagcagcagcaacaagacgCAATCATCCAGTGCAAAGGAtgaaggcaacaacaatagcagcaacaacaacattactGGAAATGGAGATGTCAAACTAAATCCTCTCGAGACGCTCAGTTTGCTATCGGGCATGCAATTTCAAGTGGCACGCAACGGAATCAATGCACATGGTGAACAACAATTGATTGTCAATCTCGAACTGAATGGCATTAAGTATACGGGTGTGTTGGTGGCATCCAcaggggcaacaacaacaacaacagcatcagcaacaacaggtgTAGCAGTCAGGTCAGAGAAGGACTTGCAGCAGGAGAAGTCAGAGTTGCCAGcacctgctgttgttgtagctgagGAACCAAGCCAAGTTGATGGCAATGAGGATGCACTCAAGCATGACAACAGCCAGGAACTGAGCCAAAATGAGGCTATTGATGAGGAatcaacaatgacaacaacaacaacaacgacagcacaggaacaacagcagcaacaacaacatacagaAGACATTGTGAATGGAAcagcaaatgttgctgctggtggagGTGGTGGGGGTCTTGGCTTAGGTGTAGGTGTGGGAGTTGGCTTAAGTGTGGTGGGTGCAAGTCTGCTTAAAGATGCTGTGGTGAGTTCGTAA
- Protein Sequence
- MDCSGRSNNNIERDSDLGDDLSHGDRTDDEMRDCDSVDGEHHQLSAKAAIAARLSHTVAGGGVGVGGSVGGGINFASPEQQTDLPLSHHHQLPPNHPLNALGSFMGIGGLHSIPNLQHSDVLEKLKMQVRDMKVGLMEQDYAAAAHAAAFGANMLPTTINAAFPLPHNSAAAAAAAAAAAAAAAASFGHNTNANANSNANALPPTSSNGATYNGGAGHNVGATSVNNNNNNNAANSGASGGGAVASGGGNSSSNNNNGHPFSFASPTAPSNTKEARHFTANSASNSSTSSEASNSSQQNNGWSFEEQYKQVRQLYEINDDPKRKEFLDDLFSFMQKRGTPINRLPIMAKSVLDLYELYNLVIARGGLVDVINKKLWQEIIKGLHLPSSITSAAFTLRTQYMKYLYPYECEKKNLSTPAELQAAIDGNRREGRRSSYGQYEAMHNQMPMAPISRPPLPGGMQQMSPLALVTHAAAANNQQAQAAAAAAAAHRRLMGGPAFGQMPNLMTQEIENRMMEYLQLIQAKKEQQQQQQQQQQNTPVLGATHPHQQQQQQQTLHHHQQQQQQQQQQQQQQRQRSQSPELSTRDALSAQVALWHMYHNSSPTGSAHTSPQQREALNLSDSPPTLNLNHIKRERERDPTPEPTDLEEPAHQPPPAKRVGSGLMPPGFPANFYLNPHNMAAVAAAAGFHHQATAAAANNHHHHQQHQQQHQHQDAASEGEPDDEYDNGEHNTTGNSSSLNDDNEPQQLNGHHHHPLHHHHHLHHSHDDDVDHDSHHHHHHQNHLDKSDDSAIENSPSTSTTTTTTQTSSHRNSSPVSTKKKSSVNSNNNNSSSNKTQSSSAKDEGNNNSSNNNITGNGDVKLNPLETLSLLSGMQFQVARNGINAHGEQQLIVNLELNGIKYTGVLVASTGATTTTTASATTGVAVRSEKDLQQEKSELPAPAVVVAEEPSQVDGNEDALKHDNSQELSQNEAIDEESTMTTTTTTTAQEQQQQQQHTEDIVNGTANVAAGGGGGGLGLGVGVGVGLSVVGASLLKDAVVSS
Similar Transcription Factors
Sequence clustering based on sequence similarity using MMseqs2
- 100% Identity
- iTF_01326946; iTF_01320973; iTF_01327672;
- 90% Identity
- -
- 80% Identity
- -