Basic Information

Insect: Scaptomyza reducta
Gene Symbol: -
Assembly: GCA_035044485.1
Location: JAWNNV010000703.1:69565-72749[+]

Transcription Factor Domain

TF Family: zf-C2H2
Domain: zf-C2H2 domain
PFAM: PF00096
TF Group: Zinc-Coordinating Group
Description: The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
Hmmscan Out: # of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc

1 16 2.7e-05 0.0018 18.6 5.9 1 23 171 194 171 194 0.97

2 16 0.0016 0.11 12.9 3.4 1 23 244 267 244 267 0.96

3 16 0.0007 0.049 14.1 2.6 1 23 332 355 332 355 0.94

4 16 0.008 0.55 10.7 0.4 2 23 407 428 406 428 0.96

5 16 8.9 6.1e+02 1.2 2.5 1 20 541 560 541 562 0.85

6 16 0.025 1.7 9.2 0.6 1 23 571 593 571 593 0.93

7 16 0.0005 0.035 14.5 2.2 1 23 600 622 600 623 0.95

8 16 0.00043 0.03 14.7 1.4 2 23 631 652 630 652 0.96

9 16 0.011 0.75 10.3 0.1 2 21 679 698 678 702 0.88

10 16 0.11 7.6 7.2 0.9 1 23 741 764 741 764 0.95

11 16 1.1 73 4.1 3.3 1 22 771 792 771 792 0.96

12 16 0.00075 0.052 14.0 0.7 1 23 801 824 801 824 0.97

13 16 1.5e-05 0.0011 19.3 0.5 1 23 843 866 843 866 0.97

14 16 0.093 6.4 7.4 0.2 1 23 876 898 876 898 0.94

15 16 2.4e-05 0.0016 18.7 3.3 1 23 904 926 904 926 0.99

16 16 5e-05 0.0034 17.7 0.9 1 23 932 954 932 954 0.98

#	of	c-Evalue	i-Evalue	score	bias	hmm coord from	hmm coord to	ali coord from	ali coord to	env coord from	env coord to	acc
1	16	2.7e-05	0.0018	18.6	5.9	1	23	171	194	171	194	0.97
2	16	0.0016	0.11	12.9	3.4	1	23	244	267	244	267	0.96
3	16	0.0007	0.049	14.1	2.6	1	23	332	355	332	355	0.94
4	16	0.008	0.55	10.7	0.4	2	23	407	428	406	428	0.96
5	16	8.9	6.1e+02	1.2	2.5	1	20	541	560	541	562	0.85
6	16	0.025	1.7	9.2	0.6	1	23	571	593	571	593	0.93
7	16	0.0005	0.035	14.5	2.2	1	23	600	622	600	623	0.95
8	16	0.00043	0.03	14.7	1.4	2	23	631	652	630	652	0.96
9	16	0.011	0.75	10.3	0.1	2	21	679	698	678	702	0.88
10	16	0.11	7.6	7.2	0.9	1	23	741	764	741	764	0.95
11	16	1.1	73	4.1	3.3	1	22	771	792	771	792	0.96
12	16	0.00075	0.052	14.0	0.7	1	23	801	824	801	824	0.97
13	16	1.5e-05	0.0011	19.3	0.5	1	23	843	866	843	866	0.97
14	16	0.093	6.4	7.4	0.2	1	23	876	898	876	898	0.94
15	16	2.4e-05	0.0016	18.7	3.3	1	23	904	926	904	926	0.99
16	16	5e-05	0.0034	17.7	0.9	1	23	932	954	932	954	0.98

Sequence Information

Coding Sequence: ATGGCAAGAACGTGTAGAGTCTGCGCTGGCTCAAAAGGACGCTTTTGGATAGAGTCGCCAGTTGATAAATACGcgccaaaaacatttaatcaaGTGGTACTGGAGCTAACTAAACTTGAGGTCGATCTGGATGAAAGTGATAAGCTGCCGCCCTGGATTTGCTCAAAGTGTGTTCAAAGATTAGAAAATGCTTACGACTTTGTACTGCAGGCGCGCAAAACTTATAATCTCTGGCTACAGAAACTGGCTGTAATATCCCTGTCAAAGGACACTGAAACGGCGACTTTGGAGTGCTTGCGAGAGACGCCCATACAATTGCTGGAAATAGAGGATGTCACAATCAAAATGGAAGAgccaacagaaacagcaataACACATTTAGATTCAAACAGCACAATTGACCCACTAATCAAGAAAAGTCGTTTAGATGTTGCCAGGGATGATGGATCTGAAGACGATGATGTGCCGCTCAAGCAGCGCCAAttggcacacaaaaaactgcCAATAATGCACCAATGCAACAAGTGTGACAAAACCTTTAGATATATAACGAATCTCTTCCGGCACAAACGACGAGATCACAGTCCGGAACATAGCCAAACTAAAGAGCAGACTGACgaaatgaaaccaaaaactGATGGCATGAAACCGTTGCTACACAATATAATCAAAAGCTCCATTGAAGTCCAAAGCAGCGCTGATCATGAAAATGAATTAGGAGATAGCTACTACAAATGCGATCAATGCGACAAATCCTACAAGTACATAATGCTGTTAATCAAGCACAAACACAAGGAGCACGTTTCCAGCCAATGGCCATCCGAACCGAGACCAATTCGAAGCAGCGGACCAAGTGCAGAACCGTCGCCTAGGCAAGGACTTTCACGTCTGCTCTCTAAACCATCCAGCACAGATTCTCTGGTACATAGCATTATAAAAGAGATTAACTTGCCTGATGAGGACGATGCAGACAACTCGAGTGCAGACAATTACTACAAATGCGACCAGTGCGACAAGTCTTACAAATACATTGTGAGTCTCAtcaagcacaagcacaacGTACACAAAGAGTACAATGATTCTGatgaggacgaggacgaggcAACCGCTTCTAGATATGTAGCAGATGCATCTGCATTGTCTAAGCCGTCGCGCATTGATCGCCGCGTTAAGGGTTTTGATTTGCATCGCTGTAGGCCGAATGGATCCAAAGAAATTCAATGCATGATCTGTCTGCGCAGATTTATCAAATTACGAGAGCTGCGCGATCATTTGAAAGCACATCCCAAAGACTTCACATTTGAGGCTCACGGCGAGCCAATTGAACGCATTGCCGAGGGATTCTATAAGACAGCCGTGGAGTCCACAGCTGCGGGCCTTAAGCGACGCATCTTCAACGATCTCGAAGTGGGCATGTTTGGACGCTACTACTCCATTAACAATGAGGCGCGCTACGAGATGAATTTGGACAGTTCGGACACTGACAGCGACGGCGAAGCAGATGTTGTGGAGCGAAACTCATATGCCTGCGAACTGTGTGACTCCCCCGACGCCGTGTGGCCACGCAAATATCAGTTGCACGAGCATCATCGACAGAAGCACACCTGGTTGGAGGCGCCGCACGTCTGTCAGCGCTGTGATTCACGTTTTCTCAGTGCCCAGCTGCTCGAGCATCATACACATAAACTGTGCCAGAACACTTTAAAGCGTTTCATGTGTGATAAGTGTCCGCAGCGTTTTTTTTGGCGCCGCAATCTACGTGCACATCTCGTGGATCACAAAAACAAGCAAGAGACATATGCATGTGATCAATGCTCGCGCAGTTTTCAGGACAAAAGTGCTGTAACCAAGCATAAGCTAATGCATCATGATGTTAGCAACGAGCTCTTACCTTGCCGCTGGTGCACACGCACTTTTTATCGTCCGGCACTGCTGCACAAGCATGTGCAGCGTCACGGCTTTAGTGGTGAGGATCTACCACTGGCAGAGACACTGCTGGCCGACGCTGCCAAGCCATCGGGGACTAAAAGAATAGTCTGTAAGCTTTGCGACATGCAGTTCGTAAGCATTGGCGATCTACGGCGACACAACTCAATGCAGGCGCACTCTGATGAGGTGTTGTCAAACTATATGATAAGCACCGAGGAGGGCTTTGAACTGCAACTGGATGAAACGGACGAGAGTGATGAAGAGCCCACGAGTACAGTAGCCAATAGAACTTATCGATGCGATCTGTGTGAGATGAGCTTCCTCCGTAGGCGCGACATGAGCGAACATCAGTATTCCTTGCACACCTTTGACAAGCTGCCACATTCCTGCAATCATTGCATTTTCAAGACAGTTGACAAGACCATGTTGGAGCACCATCTACGCACACAATGTCTTAACGAGGCGAAAAAATTCAAGTGCTCGCGTTGCGGCTATAAATTTATGTGGCCCGAAAATCTAGAACAACACATGAGCAGTCAACATCCTAAATCATCTAGTCAGATGGCCGTTGCCACAAAGCGTAGCAGACGTTTTCGTTACCAGTGTCCGCACTGCTGGCGCTCGTTTGTGGTGCAGCCTAGCCTGGATAAGCACATACGTGACATGCATGTCGCAAAAAAGAATCCCGGCAAGAAGTATCTCTGCTCGCTGTGCGGCCTAGAATCGTTGACGCCCAACAAGCTCAGTATACACATGCGGCGACACAATGGCGAGAAGCCATTTAAGTGTGATCTCTGCGATATGTCCTTTACCGTGCACTACGAACTGAAGGTACATCGTCGCAAACACACGGGCGAGCGACCCTATCAGTGTACATTTTGTGCCAAGGATTTTGCTCGACCGGATAAGCTAAGACGACATGTTTACATGCATAGCGTTAAGCGTTAA
Protein Sequence: MARTCRVCAGSKGRFWIESPVDKYAPKTFNQVVLELTKLEVDLDESDKLPPWICSKCVQRLENAYDFVLQARKTYNLWLQKLAVISLSKDTETATLECLRETPIQLLEIEDVTIKMEEPTETAITHLDSNSTIDPLIKKSRLDVARDDGSEDDDVPLKQRQLAHKKLPIMHQCNKCDKTFRYITNLFRHKRRDHSPEHSQTKEQTDEMKPKTDGMKPLLHNIIKSSIEVQSSADHENELGDSYYKCDQCDKSYKYIMLLIKHKHKEHVSSQWPSEPRPIRSSGPSAEPSPRQGLSRLLSKPSSTDSLVHSIIKEINLPDEDDADNSSADNYYKCDQCDKSYKYIVSLIKHKHNVHKEYNDSDEDEDEATASRYVADASALSKPSRIDRRVKGFDLHRCRPNGSKEIQCMICLRRFIKLRELRDHLKAHPKDFTFEAHGEPIERIAEGFYKTAVESTAAGLKRRIFNDLEVGMFGRYYSINNEARYEMNLDSSDTDSDGEADVVERNSYACELCDSPDAVWPRKYQLHEHHRQKHTWLEAPHVCQRCDSRFLSAQLLEHHTHKLCQNTLKRFMCDKCPQRFFWRRNLRAHLVDHKNKQETYACDQCSRSFQDKSAVTKHKLMHHDVSNELLPCRWCTRTFYRPALLHKHVQRHGFSGEDLPLAETLLADAAKPSGTKRIVCKLCDMQFVSIGDLRRHNSMQAHSDEVLSNYMISTEEGFELQLDETDESDEEPTSTVANRTYRCDLCEMSFLRRRDMSEHQYSLHTFDKLPHSCNHCIFKTVDKTMLEHHLRTQCLNEAKKFKCSRCGYKFMWPENLEQHMSSQHPKSSSQMAVATKRSRRFRYQCPHCWRSFVVQPSLDKHIRDMHVAKKNPGKKYLCSLCGLESLTPNKLSIHMRRHNGEKPFKCDLCDMSFTVHYELKVHRRKHTGERPYQCTFCAKDFARPDKLRRHVYMHSVKR

Similar Transcription Factors

Sequence clustering based on sequence similarity using MMseqs2

100% Identity: iTF_00567692;
90% Identity: iTF_01325813; iTF_01328064; iTF_01321355;
80% Identity: -