Basic Information

Insect: Scaptomyza tumidula
Gene Symbol: -
Assembly: GCA_035044465.1
Location: JAWNNW010000320.1:1828721-1831900[-]

Transcription Factor Domain

TF Family: zf-C2H2
Domain: zf-C2H2 domain
PFAM: PF00096
TF Group: Zinc-Coordinating Group
Description: The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
Hmmscan Out: # of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc

1 15 0.00019 0.013 15.9 6.7 1 23 170 193 170 193 0.96

2 15 0.0016 0.11 12.9 3.4 1 23 243 266 243 266 0.96

3 15 0.0004 0.028 14.8 1.4 1 23 331 354 331 354 0.93

4 15 0.0079 0.56 10.7 0.4 2 23 406 427 405 427 0.96

5 15 0.024 1.7 9.2 0.6 1 23 570 592 570 592 0.93

6 15 0.0005 0.035 14.5 2.2 1 23 599 621 599 622 0.95

7 15 0.00043 0.03 14.7 1.4 2 23 630 651 629 651 0.96

8 15 0.015 1 9.9 0.1 2 19 678 695 677 701 0.91

9 15 0.015 1.1 9.8 2.7 1 23 740 763 740 763 0.96

10 15 1.4 98 3.7 3.7 1 22 770 791 770 791 0.96

11 15 0.049 3.5 8.3 0.5 1 23 800 823 800 823 0.96

12 15 1.5e-05 0.0011 19.3 0.5 1 23 842 865 842 865 0.97

13 15 0.092 6.5 7.4 0.2 1 23 875 897 875 897 0.94

14 15 2.3e-05 0.0017 18.7 3.3 1 23 903 925 903 925 0.99

15 15 4.9e-05 0.0035 17.7 0.9 1 23 931 953 931 953 0.98

#	of	c-Evalue	i-Evalue	score	bias	hmm coord from	hmm coord to	ali coord from	ali coord to	env coord from	env coord to	acc
1	15	0.00019	0.013	15.9	6.7	1	23	170	193	170	193	0.96
2	15	0.0016	0.11	12.9	3.4	1	23	243	266	243	266	0.96
3	15	0.0004	0.028	14.8	1.4	1	23	331	354	331	354	0.93
4	15	0.0079	0.56	10.7	0.4	2	23	406	427	405	427	0.96
5	15	0.024	1.7	9.2	0.6	1	23	570	592	570	592	0.93
6	15	0.0005	0.035	14.5	2.2	1	23	599	621	599	622	0.95
7	15	0.00043	0.03	14.7	1.4	2	23	630	651	629	651	0.96
8	15	0.015	1	9.9	0.1	2	19	678	695	677	701	0.91
9	15	0.015	1.1	9.8	2.7	1	23	740	763	740	763	0.96
10	15	1.4	98	3.7	3.7	1	22	770	791	770	791	0.96
11	15	0.049	3.5	8.3	0.5	1	23	800	823	800	823	0.96
12	15	1.5e-05	0.0011	19.3	0.5	1	23	842	865	842	865	0.97
13	15	0.092	6.5	7.4	0.2	1	23	875	897	875	897	0.94
14	15	2.3e-05	0.0017	18.7	3.3	1	23	903	925	903	925	0.99
15	15	4.9e-05	0.0035	17.7	0.9	1	23	931	953	931	953	0.98

Sequence Information

Coding Sequence: ATGGCAGGAACGTGTAGAGTCTGCGGAGGCTCAAAAGGACGCTTTTGCATCGAGACGCCAGTTGATAAATACGCTCCGAAAACATTTAATCAACTGGTACTGGAACTAACTAAACTTGAGGTCAATTTGGATGAAACTGACAAACTGCCGCCCTGGATTTGCTCAAAGTGTGTACAAAGATTAGAAAATGCCTACGACTTTGTACTGCAGGCGCGCAAAACTTATAAGCTCTGGCTGCAGAAACTAGCTGCAATATCCCTGTCAAAGGACACCGAAACGACGACTTTAGAGTGCTTGCGAGAGACGCCCATAAAATTGCTGGAAATAGAAGGCGTCACAATCAAAATGGAAGAgccaacagaaacagcaacacacTTAGATTTAATTAGCACAATTGACCCTTTGATCAAGAAAAGTCGTTTTGATGTTGCCTTGGATGATGATTCTGAAGACGATGATGTGCCGCTGAAGCAGCGCCAAACGGCACACAAAAAACTGCCAATAATGCACCATTGCAACAAGTGTGACAAAGCCTTCAGATATATAACGAATCTCTTCCGACACAGACGCCGAGATCACAGTCCAGAACATAGCCAAACCAAAGAGCAGACTGACGAAAAGAATCCAAGAACTGATGGCATGAAACCGTTGGTACGCAACATAATCAAAAGCTCCATTGAAGTCCAAAGCAGCGCCGAtaatgaaaatgaattagGAGATAGCTACTACAAATGTGATCAATGCGACAAATCCTACAAGTACATAATGCTGTTAatcaaacacaagcacaaggaGCACGTTTCCAGCCAATGGCCAACACAACCGAGACCAATTAAAAACAGCGGACCAAGTGCGGAACAGTCACCTAAGCAAGGACTCTCGCGTCAGCTCTCAAAACCATCCAGCACAGATTCTCTGGTACATAGCATTATAAAAGAGATTAACTTGCCTGATGAGGACGATGCAGACAACTCGAGTGCAGACAATTACTACAAATGCGACCAATGCGACAAGTCTTACAAATACATTGTGAGTCTCATCAAGCACAAGTACAACGTACACAAAGAGTACAATGATTCTGATGAAGAAGAGGACGAGGCAACCGCTTCTAGATATGTAGCAGATGCATCTGCGATGTCTAAGCCGTCGCGGATTGATCGCCGCGTTAAGGGATTTGATTTGCATCGCTGTAGGCCGAATGGAGCCAAAGAAATTCAATGCATGATCTGTCTACGCAGATTTATCAAATTACGAGAGCTGCGCGATCATTTGAAAGCACATCCCAAAGACTTTACATTTGAGGCTCACGGCGAGCCAATTGAACGCATTGCCGAGGGATTCTATAAAACAGCCGTGGAGTCCACAGATGCGGGCCTTAAGCGACGCATCTTCAATGATCTCGAAGTGGGCATGTTTGGACGCTACTACTCCATTAACAATGAGGCGCGCTACGAGATGAATTTGGACAGTTCGGACACAGACAGCGACGGCGAAGCAGATGTTGTGGAGCGAAACTCATATGCCTGCGAATTGTGTGACTCCCCCAACGCCGTGTGGCCACGCAAATATCAGTTGCATGAGCATCATCGACAGCAGCACACCTGGCTGGAGGCGCCGCACGTCTGTCAGCGCTGTGATTCACGTTTTCTCAGTGCTCAGCTGCTCGACCATCATACACATAAACTGTGCCAGAACACTTTAAAGCGTTTCATGTGTGATAAGTGTCCGCAGCGATTCTTTTGGCGCCGCAATCTACGTGCACATCTCGTCGATCACAAAAACAAGCAAGAGACATATGCATGTGATCAATGTTCGCGCAGTTTCCAGGACAAGAGTGCTGTAACCAAGCACAAGCTAATGCATCACGATGTTAGCAACGAGCTCTTACCTTGCCGCTGGTGCACACGCACTTTTTATCGTCCGGCACTGCTACACAAGCATGTGCAGCGTCATGGCTTCAGTGGTGAGGATCTACCACTGGCAGAGACACTGCTGGCAGACGCTGCCAAGCCATCGGGGACTAAAAGGATCGTCTGTAAGCTTTGCGACATGCAGTTCGTAAGCATTGGCGATCTACGGCGACACAACTCATTGCAGGCGCACCGGGATGAGGTGTTGTCAAACTATATGATAAGCACCGAGGATGGCTTTGAACTGCAACTGGATGAAACGGACGAGAGTGATGAAGAGCCGACGAGTACAGTAGCCAATAGAACTTATCGATGCGATCTGTGTGAGATGAGCTTCCACCGCAGGCGCGACATGAGCGAACATCAGTATTCCTTGCATACCTTTGACAAGCTGCCACATTCCTGCAAGCATTGCATTTTCAAGACAGTTGATAAGACCATGTTGGAGCACCACCTGCGCACACAATGTCTTAACGAGGAGAAAAAATTCAAGTGTTTGCGTTGCGGGTACAAATTTATGTGGGTCGAAAATCTAGAACAACACATAAGCAGTCAACATCCTAAATCATCCAGTCAGATGCCCGTTGCCACAAAGCGTAGCAGACGTTTTCGTTACCAGTGTCCGCACTGCTGGCGCTCGTTTGTGGTGCAGCCTAGCCTGGATAAGCACATACGAGACATGCATGTCGCAAAAAAGAATCCCGGCAAGAAGTATCTCTGCTCGCTGTGCGGCCTAGAATCGTTGACGCCCAACAAGCTTAGTATACACATGCGGCGTCACAACGGTGAGAAGCCATTTAAATGTGATCTCTGCGATATGTCCTTTACCGTGCACTACGAACTGAAGGTACATCGTCGCAAGCACACGGGCGAGCGACCCTATCAGTGTACATTTTGTGCCAAGGATTTTGCTCGACCGGATAAGCTAAGACGACATGTTTACATGCATAGCGTTAAGCGTTAA
Protein Sequence: MAGTCRVCGGSKGRFCIETPVDKYAPKTFNQLVLELTKLEVNLDETDKLPPWICSKCVQRLENAYDFVLQARKTYKLWLQKLAAISLSKDTETTTLECLRETPIKLLEIEGVTIKMEEPTETATHLDLISTIDPLIKKSRFDVALDDDSEDDDVPLKQRQTAHKKLPIMHHCNKCDKAFRYITNLFRHRRRDHSPEHSQTKEQTDEKNPRTDGMKPLVRNIIKSSIEVQSSADNENELGDSYYKCDQCDKSYKYIMLLIKHKHKEHVSSQWPTQPRPIKNSGPSAEQSPKQGLSRQLSKPSSTDSLVHSIIKEINLPDEDDADNSSADNYYKCDQCDKSYKYIVSLIKHKYNVHKEYNDSDEEEDEATASRYVADASAMSKPSRIDRRVKGFDLHRCRPNGAKEIQCMICLRRFIKLRELRDHLKAHPKDFTFEAHGEPIERIAEGFYKTAVESTDAGLKRRIFNDLEVGMFGRYYSINNEARYEMNLDSSDTDSDGEADVVERNSYACELCDSPNAVWPRKYQLHEHHRQQHTWLEAPHVCQRCDSRFLSAQLLDHHTHKLCQNTLKRFMCDKCPQRFFWRRNLRAHLVDHKNKQETYACDQCSRSFQDKSAVTKHKLMHHDVSNELLPCRWCTRTFYRPALLHKHVQRHGFSGEDLPLAETLLADAAKPSGTKRIVCKLCDMQFVSIGDLRRHNSLQAHRDEVLSNYMISTEDGFELQLDETDESDEEPTSTVANRTYRCDLCEMSFHRRRDMSEHQYSLHTFDKLPHSCKHCIFKTVDKTMLEHHLRTQCLNEEKKFKCLRCGYKFMWVENLEQHISSQHPKSSSQMPVATKRSRRFRYQCPHCWRSFVVQPSLDKHIRDMHVAKKNPGKKYLCSLCGLESLTPNKLSIHMRRHNGEKPFKCDLCDMSFTVHYELKVHRRKHTGERPYQCTFCAKDFARPDKLRRHVYMHSVKR

Similar Transcription Factors

Sequence clustering based on sequence similarity using MMseqs2

100% Identity: iTF_00567692;
90% Identity: iTF_01327331;
80% Identity: -