Sgra009380.1
Basic Information
- Insect
- Scaptomyza graminum
- Gene Symbol
- Lztr1
- Assembly
- GCA_018901835.1
- Location
- JAEIFL010000001.1:11549332-11552775[-]
Transcription Factor Domain
- TF Family
- BTB
- Domain
- zf-C2H2|ZBTB
- PFAM
- PF00651
- TF Group
- Zinc-Coordinating Group
- Description
- The BTB (for BR-C, ttk and bab) [6] or POZ (for Pox virus and Zinc finger) [1] domain is present near the N-terminus of a fraction of zinc finger (Pfam:PF00096) proteins and in proteins that contain the Pfam:PF01344 motif such as Kelch and a family of pox virus proteins. The BTB/POZ domain mediates homomeric dimerisation and in some instances heteromeric dimerisation [1]. The structure of the dimerised PLZF BTB/POZ domain has been solved and consists of a tightly intertwined homodimer. The central scaffolding of the protein is made up of a cluster of alpha-helices flanked by short beta-sheets at both the top and bottom of the molecule [2]. POZ domains from several zinc finger proteins have been shown to mediate transcriptional repression and to interact with components of histone deacetylase co-repressor complexes including N-CoR and SMRT [5, 3, 4]. The POZ or BTB domain is also known as BR-C/Ttk or ZiN.
- Hmmscan Out
-
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc 1 5 3.9e-05 0.0099 15.8 0.0 2 44 539 582 538 597 0.83 2 5 2.3e-08 5.9e-06 26.2 0.0 51 108 615 679 599 681 0.85 3 5 0.37 94 3.0 0.1 78 108 681 711 678 713 0.90 4 5 4.6e-19 1.2e-16 60.7 0.0 8 104 772 870 766 876 0.85 5 5 4.9 1.2e+03 -0.6 0.0 72 100 870 898 862 906 0.84
Sequence Information
- Coding Sequence
- ATGCTAAAGTCCATACTCGGCGGGGACACGAATGGTTCTGCGGAAGTTACACCAACCGGAGGCGTTGGCGGCAGGAGTGGCAGCGGAGGTGGTGGCAGTGGTAGCGGTCGAAGCACCTCAATATCCAGTGGCTTAAGTGCTGTCTGTGTCAGTGCCAGAGCAGTTGGTGCCAGCGGAAGTGCAAGTGCTAGTGGAAGCGGTGGCAACACACCAGCAACCGCTTATTGCCCTGCATGCGTTGCCAACAGTTCAAAGCAGCAACAGCAACATCAGGCAGAGGCATTGCATCAGCGCGACTCAAAGTCAGGAAAGCGGCAAAAGCAGCGCAAAAGTGCATCGACAGTTGGCTGTGTAGACGTGCACCATATACGCAACAATCTGAGCATGTCCACATCGAGCTCAACGCGCAGCACACGCGGCGGCAGCAACAGCAGCTGCAGCACTGCCTCTGCCACTGCCACTGCCTCCGCTATAATGCCATCGAATGGCATTGCCTATGATGCCAACAGCAATGGCAACGGCAGCTGCAACAGCAGCACCTTCAATTACAAAGACAGCCCGCCGGGCAGCTACAGCTTTAGCTGCAATGCCCTCAACGTTGACTTCAACTCCTATACGGCAACACATCAATGGACGCGCATGCTCGAATGTGCCGAGTTTGTTGGCGCCAAACGCAGCAAGCATACCGTGGTATCCTACAAGGATGCCATGTTTGTGTTTGGCGGCGATAATGGCAAGAATATGCTTAACGATCTGATACGTTTTGGTGTTAAGGACAAGTCATGGGGACGAGCATGTGCAACTGGAACGCCGCCAGCGCCGCGCTATCATCATTCGGCTGTTGTCGCAGGCAGCTCGATGTTCATTTTTGGCGGCTATACGGGCGACATACACTCCAACTCGAATCTGACCAACAAGAACGATTTGTTTGAGTACAAGTTTCTTAGCGCCATGTGGGTGGAGTGGAAATTTTCTGGCAGGCAACCAGTGCCACGTTCGGCACATGGCGCCGCCGTTTACGACAGCAAGATGTGGATTTATGCTGGCTATGATGGTAATGCTCGACTCAACGATATGTGGATGCTGAACTTAACGGGCGATAATCATCAATGGGAGGAGGTCGAACAGCAAGGAGATCGTCCGCCCACCTGCTGCAATTTTCCCGTTGCCGTTGCACGCGATGCCATGTACGTGTTCTCTGGTCAGAGTGGTCTCCAGATAACAAATTCATTGTTTGAGTTTCACTTTAAGACGCGCACCTGGCGTCGCATTTCCAATGAACCCGTTCTGCGTGGCGCCACATCAGCACCACCGTGTCGTCGCTATGGCCACACCATGGTCCATCACGATCGGTTCCTCTATATTTTTGGCGGTTCAGCCGATTCGACGCTGCCAAATGATTTGCATTGCTACGATCTGGATTCGCAGGTATGGTCTGTCATACAGGCGGAGCAGAACTCAGATATGCCGTCGGGTCGTGTTTTCCATGCTTCAGCAGTCATTGGTGATGCCATGTACATCTTTGGCGGTACGGTTGACAATAGCGTACGACGCGGCGATACGTACCGCTTTCAGTTCTCCAGCTATCCCAAGTGCACGCTGCGCGATGACTTTGGCAAGTTTTATCACGAGAAGCAGTTCTGTGATATTCAGTTTTTGGTTGGTTCCGAGGAGATACGCATACAGTCGCACATTGCCTTCGTTGCGTCACGCTCGAAATATTTACGCAATAAGATATTGGCGGCGCGCGATTTGCGACAACAGCAGATGGAGAAACTTTATGGCGTTGGACAGGTGGATACGTTGGCTTTGAATACGGGCGTCGGCGGGGATCGTGTGCCTATGCTGGAAGTGCGCTTGGCGCATGCCTCACCCGAGGCTTTTGAGATAATACTTAACTATATCTATACGGACCGCATTGATCTAAAGGACTCGTACAGCAAGAACATCATCATTCTCATCACGGACATCTATCAGTTGGCTGGTCTCTTCACTATGCCGCGCCTGGCGCACGGCTGCATTCAGTACCTCGACTATAAGATCAACAAAATCAACGTGCTCGAGGCGCTGTACAATGCTGATAAGAACAATATCAAAATCATTAAGGATCATTGCATGCAGTTTATTATCAAGGAGGAGAACTTCACCGAAGTGGTCATGTCCAGTGAGTTTAGCGATTTGGACAAGTCTCTTCTGGTCGAGATAATACGCAAGCGTTTGCATCCCAGCAAGCTGGTAATAGACACTACCTATGAGCCAAACATCGGCACTACGCTGGAGCATGATTTGTCCATGTTCTTGGAGACAACGGGCAAGGACTTTTGCGATATAAGTCTCATACTGGATGATCATGTGATACCAGCCCACAAATCTGTGTTATCATCACGTTGTACCTATTTTCAGGGCATGTTTCGCTCTTTTATGCCACCGGATAATACCGTTAATATACAAATTGGAGAAATTTCACCATCTCTGGAGGCCTTCCATTCTCTGCTGCGCTATATATATTATGGAGAGACACAGTTGCCGCCACAGGATGCACTCTACTTGTTTCAGGCACCCTGTTTCTATGGGCTCGCCAACAATCGTTTGCATGCATTTTGCAAATACTCATTAGAGCATAACATAACGTCGGAGAACGTGCTGCAGACGCTCGAGGCGTCTGATATAACAAAAATCTATGACATCAAAGATTATGCATTAAAACTAATTGTCAAAGATTTTGCCAAAGTGGCCAGGCTGCCCAAAATAGCCGGTTTGTCGCGCGAACTGTTGCTGGAGATAATACGCGCTGTGGCCGATTCGCAAGGCGAGTATCTCACACGCATCAATATCAATACAGATATCTGA
- Protein Sequence
- MLKSILGGDTNGSAEVTPTGGVGGRSGSGGGGSGSGRSTSISSGLSAVCVSARAVGASGSASASGSGGNTPATAYCPACVANSSKQQQQHQAEALHQRDSKSGKRQKQRKSASTVGCVDVHHIRNNLSMSTSSSTRSTRGGSNSSCSTASATATASAIMPSNGIAYDANSNGNGSCNSSTFNYKDSPPGSYSFSCNALNVDFNSYTATHQWTRMLECAEFVGAKRSKHTVVSYKDAMFVFGGDNGKNMLNDLIRFGVKDKSWGRACATGTPPAPRYHHSAVVAGSSMFIFGGYTGDIHSNSNLTNKNDLFEYKFLSAMWVEWKFSGRQPVPRSAHGAAVYDSKMWIYAGYDGNARLNDMWMLNLTGDNHQWEEVEQQGDRPPTCCNFPVAVARDAMYVFSGQSGLQITNSLFEFHFKTRTWRRISNEPVLRGATSAPPCRRYGHTMVHHDRFLYIFGGSADSTLPNDLHCYDLDSQVWSVIQAEQNSDMPSGRVFHASAVIGDAMYIFGGTVDNSVRRGDTYRFQFSSYPKCTLRDDFGKFYHEKQFCDIQFLVGSEEIRIQSHIAFVASRSKYLRNKILAARDLRQQQMEKLYGVGQVDTLALNTGVGGDRVPMLEVRLAHASPEAFEIILNYIYTDRIDLKDSYSKNIIILITDIYQLAGLFTMPRLAHGCIQYLDYKINKINVLEALYNADKNNIKIIKDHCMQFIIKEENFTEVVMSSEFSDLDKSLLVEIIRKRLHPSKLVIDTTYEPNIGTTLEHDLSMFLETTGKDFCDISLILDDHVIPAHKSVLSSRCTYFQGMFRSFMPPDNTVNIQIGEISPSLEAFHSLLRYIYYGETQLPPQDALYLFQAPCFYGLANNRLHAFCKYSLEHNITSENVLQTLEASDITKIYDIKDYALKLIVKDFAKVARLPKIAGLSRELLLEIIRAVADSQGEYLTRININTDI
Similar Transcription Factors
Sequence clustering based on sequence similarity using MMseqs2
- 100% Identity
- iTF_00479535;
- 90% Identity
- iTF_01326474;
- 80% Identity
- -