Scyr007507.1
Basic Information
- Insect
- Scaptomyza cyrtandrae
- Gene Symbol
- Lztr1_1
- Assembly
- GCA_035044605.1
- Location
- JAWNNS010000639.1:9349186-9352548[+]
Transcription Factor Domain
- TF Family
- BTB
- Domain
- zf-C2H2|ZBTB
- PFAM
- PF00651
- TF Group
- Zinc-Coordinating Group
- Description
- The BTB (for BR-C, ttk and bab) [6] or POZ (for Pox virus and Zinc finger) [1] domain is present near the N-terminus of a fraction of zinc finger (Pfam:PF00096) proteins and in proteins that contain the Pfam:PF01344 motif such as Kelch and a family of pox virus proteins. The BTB/POZ domain mediates homomeric dimerisation and in some instances heteromeric dimerisation [1]. The structure of the dimerised PLZF BTB/POZ domain has been solved and consists of a tightly intertwined homodimer. The central scaffolding of the protein is made up of a cluster of alpha-helices flanked by short beta-sheets at both the top and bottom of the molecule [2]. POZ domains from several zinc finger proteins have been shown to mediate transcriptional repression and to interact with components of histone deacetylase co-repressor complexes including N-CoR and SMRT [5, 3, 4]. The POZ or BTB domain is also known as BR-C/Ttk or ZiN.
- Hmmscan Out
-
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc 1 5 7.8e-05 0.019 15.2 0.0 2 50 537 586 536 595 0.78 2 5 1.1e-08 2.7e-06 27.6 0.0 51 108 613 677 597 679 0.86 3 5 0.49 1.2e+02 2.9 0.1 78 108 679 709 676 711 0.90 4 5 5.1e-19 1.3e-16 60.8 0.0 8 104 770 868 764 874 0.85 5 5 6.2 1.5e+03 -0.6 0.0 72 100 868 896 860 904 0.84
Sequence Information
- Coding Sequence
- ATGCTAAAGTCCATACTCGGCGGGGACACGAATGGTTCTGCGGAAGAGGGCGTTGGTGGCAGGAGTGGCAGCGGAGGCAGCAGTCGAAGCACCAATAGTACGGGCGTATTAAGCCGACCCGATAGTGGTCTGGGCTCCAGCTCAATATCCAGTGGCTTAAGTGCTGTCGGTGGAAGTGGCAGAGCAAGTGGTAGCAGCGGAAGTGCCAGTGGCAGTGGTGGCAGTACGCCAGCAACTGTTTATTGCCAGGCATGCGCAGCCAGCAGctcacaacagcagcagcgcgaTTCGAAGTCGGGAAAGCGGCAAAAGCCGCGCAAAAGTGCATCGACAGCCGGGTGCGTAGACGTGCAGCATATACGTAACAATTTGATGATGTCCACATCGAGTTCAACACGCAGCACACgcggtggcagcaacagcaacagcagctgcagcaatgCCTCTGCCACTGCCTCCGCTTTAATGCAATGCAACAATGGCATTGCGTATGATGccaacagcaatggcaacggaagctgcaacagcagcacctaTAGTGGCAAAGACGGCTCGCCGGGCAGCTACAGTTACAGCTGCAATGCCCTAAACGTTGATTTCAACTCCTATACGGCAACACATCAGTGGACGCGCATGCTCGAATGTGCCGAGTTTGTTGGCGCCAAACGCAGCAAGCACACGGTGGTTTCCTACAAAGATGcgatgtttgtgtttggcgGCGATAATGGCAAGAACATGTTAAACGATCTTATTCGGTTTGGTGTTAAGGACAAGTCATGGGGTCGAGCATGTGCAACTGGTACGCCACCAGCGCCGCGTTATCATCATTCTGCTGTTGTCGCCGGTAGCTCGATGTTCATATTTGGCGGCTATACGGGCGACATACACTCCAATTCGAATCTGACcaacaaaaatgatttgtttgaGTACAAGTTTCTCAGCGCCATGTGGGTGGAGTGGAAATTCTCTGGCAGTCAACCAGTTCCACGTTCAGCACACGGTGCAGCCGTTTACGATAACAAAATGTGGATTTATGCTGGCTATGATGGTAATGCCCGACTTAACGATATGTGGACCCTGAACTTAACGGGCGACAATCATCAGTGGGAGGAGGTGGAACAGCAGGGAGATCGTCCCCCTACATGCTGCAATTTTCCCGTTGCCGTTGCACGCGATGCAATGTATGTGTTTTCGGGGCAGAGTGGTCTTCAGATAACAAATTCATTGTTTGAGTTCCACTTCAAGACGCGCACTTGGCGTCGCATTTCCAACGAACCAGTGCTACGTGGCGCCACATCAGCACCACCATCTCGTCGCTATGGCCACACCATGGTCCATCACGATCGCTTTCTATTCATATTTGGCGGCTCAGCTGATTCGACGCTGCCAAACGATTTGCACTGCTTCGATCTGGATTCGCAGGTATGGTCTGTGATAACGGCGGAGCAGAACTCTGATATGCCGTCGGGTCGTGTCTTTCATGCATCAGCAGTCATTAATGATGCCATGTACATCTTTGGCGGCACTGTGGACAATAGCGTACGACGCGGCGACACGTATCGTTTTCAGTTCTCCAGCTATCCAAAGTGTACGCTGCGCGATGACTTTGGCAAATTTTATCACGAGAAGCAATTCTGTGATATTCAGTTTCTGGTTGGTGTCGAGGAGATACGTGTACTGTCGCACATTGCGTTTGTTGCAGCACGCTCCAAATATTTGCGCAATAAGATATTGGCGGCACGTGAGGCGCGACAACATCAGATGGAAAAACTTTATGGCGTTGGACAGGTGGATACGTTGGCTTTAAATACGGGCGTCGGCGGGGATCGTGTGCCTATGCTGGAAGTGCGCTTGCAACATGCCTCACCAGAGGCATTTGAGATTATACTTAACTATATCTATACGGATCGCATTGATCTGAAGGACACGTACAGCAAGAACATCATCATTCTCATCACGGACATCTATCAGTTGGCTGGTCTATTCACAATGCCGCGCCTGGCGCACGGCTGCATTCAGTATCTGGACTATAAGATCAACAAAATCAATGTGCTCGAGGCGCTGTACAATGCTGACAAAAGCAACATCAAAATCATTAAGGATCATTGCATGCAGTTTATCATCAAGGAAGAGAACTTTACCGAAGTGGTCATGTCGAGTGAGTTTAGCGATTTGGACAAGCCACTTCTGGTCGAGATAATACGCAAGCGTTTGCATCCCAGCAAACTGGTAATAGACACTTCCTATGAGTCAAACATTGGCACTACGCTGGAGCATGATTTGTCCATGTTCTTGGAGACAACGGGCAAGGACTTTTGCGATATAAGTCTATTACTGGATGATCAAGTGATACCAGCCCACAAATCTGTGTTATCATCACGTTGTACCTACTTCCAGGGCATGTTTCGCTCTTTTATGCCACCGGATAATACCGTTAATaTACAAATTGGAGAAATTTCTCCCTCTGTGGAGGCGTTCCATTCTCTGTTGcgctatatatattatggaGACACAAAGATGCCACCACAGGATGCACTCTACTTGTTCCAAGCACCATGTTTCTATGGGCTGGCCAACAATCGTTTGCATGCATTCTGCAAATACTCATTGGAGCATAACATAACGTCGGAGAATGTGTTGCAAACGCTCGAAGCGTCTGATATAACAAAAATCTATGACATCAAAGATTATGCATTGAAACTAATTGTCAAAGATTTTGCCAAAGTGGCCAGGCTGCCCAAAATAGCCGGTTTGTCGCGCGAACTGTTGCTGGAGATAATACGCGCTGTGGCCGATTCGCAAGGCGAGTTTCTCACTCGCATCAATATCAATACAGATATATGA
- Protein Sequence
- MLKSILGGDTNGSAEEGVGGRSGSGGSSRSTNSTGVLSRPDSGLGSSSISSGLSAVGGSGRASGSSGSASGSGGSTPATVYCQACAASSSQQQQRDSKSGKRQKPRKSASTAGCVDVQHIRNNLMMSTSSSTRSTRGGSNSNSSCSNASATASALMQCNNGIAYDANSNGNGSCNSSTYSGKDGSPGSYSYSCNALNVDFNSYTATHQWTRMLECAEFVGAKRSKHTVVSYKDAMFVFGGDNGKNMLNDLIRFGVKDKSWGRACATGTPPAPRYHHSAVVAGSSMFIFGGYTGDIHSNSNLTNKNDLFEYKFLSAMWVEWKFSGSQPVPRSAHGAAVYDNKMWIYAGYDGNARLNDMWTLNLTGDNHQWEEVEQQGDRPPTCCNFPVAVARDAMYVFSGQSGLQITNSLFEFHFKTRTWRRISNEPVLRGATSAPPSRRYGHTMVHHDRFLFIFGGSADSTLPNDLHCFDLDSQVWSVITAEQNSDMPSGRVFHASAVINDAMYIFGGTVDNSVRRGDTYRFQFSSYPKCTLRDDFGKFYHEKQFCDIQFLVGVEEIRVLSHIAFVAARSKYLRNKILAAREARQHQMEKLYGVGQVDTLALNTGVGGDRVPMLEVRLQHASPEAFEIILNYIYTDRIDLKDTYSKNIIILITDIYQLAGLFTMPRLAHGCIQYLDYKINKINVLEALYNADKSNIKIIKDHCMQFIIKEENFTEVVMSSEFSDLDKPLLVEIIRKRLHPSKLVIDTSYESNIGTTLEHDLSMFLETTGKDFCDISLLLDDQVIPAHKSVLSSRCTYFQGMFRSFMPPDNTVNIQIGEISPSVEAFHSLLRYIYYGDTKMPPQDALYLFQAPCFYGLANNRLHAFCKYSLEHNITSENVLQTLEASDITKIYDIKDYALKLIVKDFAKVARLPKIAGLSRELLLEIIRAVADSQGEFLTRININTDI
Similar Transcription Factors
Sequence clustering based on sequence similarity using MMseqs2
- 100% Identity
- iTF_00479535;
- 90% Identity
- iTF_01326474;
- 80% Identity
- -