Ssub017193.1
Basic Information
- Insect
- Sarcophaga subvicina
- Gene Symbol
- lrrfip2
- Assembly
- GCA_936440885.2
- Location
- CAKZFJ020000183.1:645423-655609[+]
Transcription Factor Domain
- TF Family
- LRRFIP
- Domain
- LRRFIP domain
- PFAM
- PF09738
- TF Group
- Unclassified Structure
- Description
- LRRFIP1 is a transcriptional repressor which preferentially binds to the GC-rich consensus sequence (5'- AGCCCCCGGCG-3') and may regulate expression of TNF, EGFR and PDGFA [1]. LRRFIP2 may function as activator of the canonical Wnt signalling pathway, in association with DVL3, upstream of CTNNB1/beta-catenin [2].
- Hmmscan Out
-
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc 1 6 1 3.5e+04 -6.1 11.8 49 114 9 74 1 78 0.58 2 6 0.16 5.6e+03 -2.8 4.2 41 84 66 110 50 125 0.50 3 6 0.75 2.6e+04 -4.9 8.8 227 280 160 213 117 230 0.76 4 6 1 3.5e+04 -7.1 9.4 24 53 208 237 183 288 0.52 5 6 3.1e-117 1.1e-112 377.2 26.4 1 299 378 674 378 675 0.94 6 6 0.074 2.6e+03 -1.6 3.7 220 245 703 728 678 749 0.47
Sequence Information
- Coding Sequence
- atgtCAGTAGAACAAAAATTAACTGATAAAAATGTTGTGACTACTACAACGACCACAAATAATACAACGTCGAGTTCAAATTCGAATTCGAATTCAAAACcgagtaataataaaaagaacaacaacaatagtgctaaaaaaatcattaaaaaggcATTGAAAACGtcaaaatctaaaaaaacaaacaaaacggcAAATGCtaatgtcaacaacaacagcaacagtggcagtagcaacaacaacaccgacACTAGCAATAAAACTGCGaagagcaacaataacaacaagagtAAGAACACTAATATTGAAGTCGACTGTGGCGGCATTAgtagcaataacaaaaacaacagcagtaTTGAAGTGCCTAACGATGAAATCATCGAGGAGTTGTTCGATTTCAGTGATTCCGATTTAAAAGAACTCGATGCAagcaatgaagaaaatattaaaggcaACAATAGCAACGACGTTATATCCGATATCAGTGGAGAACCTGGTGAACTAATAGAGGTGgtggaaatgcaaaaaaatgttattaatgataataagaacaataaagagcaacagcaacaagaacaacaacaggtATTAGCCATATCTAATGAATCAACTGATAACATTGATAAACAAAcagaggaaaaagaaaataatgtcgaagaagaaaacgaaattaaaacaaagactTCCACAACTAATGCGTTAGCAGAGTCAACCAATACATTAAACTTAGTAAGCAACGGCGGAAATGAAGCCctcaatgaaaataataaagaccCGGTTCAACAGCAGgcagcagaagaaaaaaaatccccaAAAGAAAATGACGCAAAACAGCAAACAATTAATGTGTTAAACGCCCATTGTTCTGTTGAAGCCAACGATAAAACATTACCATCGCCATCTTCATCACCAACTTTGCCAGACATAAAGTCtatgcaaacaaaaaatgtgtcTTCTGGTCCAGAGTTCATTAGCGTTAATAAAGAAAGTAGTCATACGGCCACCACAACTGATAAAAATAAAGCTGACAGCGATTTGTTGCCAGAAGatggtaatgatgatgatgctggtgAATATGTGGAGCCCTACGATGAACTGTTAGTTCAATTCCTTGATGAAGCAAATCAAATTGCTGAAGCTAGATTAGCTGCTAGAAGACACGCGAGAGCAGAGGCTCGCGAAATACGAATGCGTGAATTGGAACGTCAGCAAAAGGAACAAGAATCTAATGCAGATCGTGTATTCGATATGCATACGACTTCACCTGGCATAACATCATTATCACATATGCGTCTAGGCTTAGGTAGTTCACCAGTTACTGGCCTTCTAAACTCCACACGAGGCAACTCTATGTCATCAAGACGTAGTAGTGAAGATTCGCTAGAAGAGGAAGGTCGCAGCTTAAGAGATATCCGTCATGAGTTAAAgGATGTGGAAGATCGGTTTCGTAAGGCTATGATAGCAAATGCCCAGTTGGATAATGATCGTGCCTCACAAACGTATCAAATACAGTTGCTTAAAGACAAACTGGAAGATATGGAAGAATCATATGCACAGCTGCAACGCGAATGTAAAGAAAAGACACGCGATTGCAATGCCTTAAAGCGTTCGTTAGATAAGTTAAGTGAAGAGTTAAAACTGGTACAGGGTCAGCTCGATGAGCGTGACACACTGATAACAGAACAGGGTCTAGTTATTGTGGCAattgaaaatgaggatggcACTGATGCCAAACGTGCTCTAGTCAGTGTTGAAAATGCACAACTATTGGGTTCGGTACAAGGATCATTAGATGTTCGACTTAAGAAATTTAgcgaagaaaaacaacaattacaaagTGAAGTGCAACATTTGCAGGAACAATTAGAAACGTATAAAAGTCAGGGTAAAGGTCgtggcaaaaatatttcttcaaatggTCCTCTAGGctcagatgatgatgattatgaagCTCAAAgAGAAGCCAATAAAATCATTTCggattataaatataaattacaaaaagctGAACAGGAAATCGCTAGTCTACAGTCGAGTTTAGCCCGTTCCGAAACGCAAGTTATACGCTATAAAAGCACAGCAGAAGCAGCCGAAAAAGCCGAAGCAGAgcttaaaattgaaagaagGAAACTGCAAAGAGAGAATCGCGAAGCAATGGAGAAACTCGAAGAGTTAGAAACATCAAATAATCATCTGCTAAAACGTTTGGACAAATTAAAGAATGCGAAAAGTGCTTTGCTTAAAGATCTCTGA
- Protein Sequence
- MSVEQKLTDKNVVTTTTTTNNTTSSSNSNSNSKPSNNKKNNNNSAKKIIKKALKTSKSKKTNKTANANVNNNSNSGSSNNNTDTSNKTAKSNNNNKSKNTNIEVDCGGISSNNKNNSSIEVPNDEIIEELFDFSDSDLKELDASNEENIKGNNSNDVISDISGEPGELIEVVEMQKNVINDNKNNKEQQQQEQQQVLAISNESTDNIDKQTEEKENNVEEENEIKTKTSTTNALAESTNTLNLVSNGGNEALNENNKDPVQQQAAEEKKSPKENDAKQQTINVLNAHCSVEANDKTLPSPSSSPTLPDIKSMQTKNVSSGPEFISVNKESSHTATTTDKNKADSDLLPEDGNDDDAGEYVEPYDELLVQFLDEANQIAEARLAARRHARAEAREIRMRELERQQKEQESNADRVFDMHTTSPGITSLSHMRLGLGSSPVTGLLNSTRGNSMSSRRSSEDSLEEEGRSLRDIRHELKDVEDRFRKAMIANAQLDNDRASQTYQIQLLKDKLEDMEESYAQLQRECKEKTRDCNALKRSLDKLSEELKLVQGQLDERDTLITEQGLVIVAIENEDGTDAKRALVSVENAQLLGSVQGSLDVRLKKFSEEKQQLQSEVQHLQEQLETYKSQGKGRGKNISSNGPLGSDDDDYEAQREANKIISDYKYKLQKAEQEIASLQSSLARSETQVIRYKSTAEAAEKAEAELKIERRKLQRENREAMEKLEELETSNNHLLKRLDKLKNAKSALLKDL
Similar Transcription Factors
Sequence clustering based on sequence similarity using MMseqs2
- 100% Identity
- iTF_01313803; iTF_01314674;
- 90% Identity
- iTF_01313803;
- 80% Identity
- -