Basic Information

Insect: Sarcophaga carnaria
Gene Symbol: lrrfip2
Assembly: GCA_958299815.1
Location: OY283149.1:152307480-152317684[-]

Transcription Factor Domain

TF Family: LRRFIP
Domain: LRRFIP domain
PFAM: PF09738
TF Group: Unclassified Structure
Description: LRRFIP1 is a transcriptional repressor which preferentially binds to the GC-rich consensus sequence (5'- AGCCCCCGGCG-3') and may regulate expression of TNF, EGFR and PDGFA [1]. LRRFIP2 may function as activator of the canonical Wnt signalling pathway, in association with DVL3, upstream of CTNNB1/beta-catenin [2].
Hmmscan Out: # of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc

1 5 2 3.8e+04 -6.9 13.5 45 114 8 74 1 78 0.57

2 5 1.7 3.3e+04 -5.1 7.7 228 279 161 212 117 227 0.74

3 5 2 3.8e+04 -6.9 9.4 24 51 208 235 180 287 0.51

4 5 3.8e-117 7.3e-113 377.9 26.8 1 299 376 672 376 673 0.93

5 5 0.15 2.8e+03 -1.6 3.7 220 245 701 726 676 747 0.47

#	of	c-Evalue	i-Evalue	score	bias	hmm coord from	hmm coord to	ali coord from	ali coord to	env coord from	env coord to	acc
1	5	2	3.8e+04	-6.9	13.5	45	114	8	74	1	78	0.57
2	5	1.7	3.3e+04	-5.1	7.7	228	279	161	212	117	227	0.74
3	5	2	3.8e+04	-6.9	9.4	24	51	208	235	180	287	0.51
4	5	3.8e-117	7.3e-113	377.9	26.8	1	299	376	672	376	673	0.93
5	5	0.15	2.8e+03	-1.6	3.7	220	245	701	726	676	747	0.47

Sequence Information

Coding Sequence: atgtcAGTAGAACAAAAATTAACTGATAAAAATGTTGTGACTACTACAACGACCACAAATAATACAACGTCGAGTTCAAATTCGAATTCGAATTCAAAAAcgagtaataataaaaagaacaaccacaatagtgctaaaaaaatcattaaaaaggcATTGAAAACGtcaaaatctaaaaaaacaaacaaaacggcAAATGctaatgtcaacaacaacagcaacagtggcagcagcaacaacaacatcgacaCTAGCAATAAAACTGCGaagagcaacaataacaacaagagtAAGAATACTAATATTGAAGTCGACTGTGGCGGCATTAgtagcaataacaaaaacaacagcagtaTTGAAGTGCCTAACGATGAAATCATCGAGGAGTTGTTCGATTTCAGTGATTCCGATTTAAAAGAACTCGATGCAAgcaatgaagaaaatattaaaggcAACAATAGCAACGACGTTATATCCGATATCAGTGGAGAACCTGGTGAACTAATAGAGGTGgtggaaatgcaaaaaaattttattaatgataataagaacaataaagagcaacagcaacaagaacaacaacaggtATTAGCCATATCTAATGAATCAACTGATAACATTGATAAACAAAcagaggaaaaagaaaataatgtcgaagaagaaaacgaaattaaaacaaagactTCCACAACTAATGCGTTAGCAGAGTCAACCAATACATTAAACTTAGTAAGCAACGGCGGAAATGAAACCctcaatgaaaataataaagaccCGGTTCAACAGacagcagaagaaaaaaaatccccaCAAGAAAATGACGCAAAACAGCAAACAATTAATGTGTTAAACACCCATTGTTCTGTTGAAGCCAACGATAAAATATTAGCATCGCCATCTTCATCACCAACTTTGCCAGACATAAAGTCtatgcaaacaaaaaatgtgtCTTCTGGTCCAGAGTTCATTAGCGTTAATAAAGAAAGTAGTCATACGGCCATCACAACTGATAAAAATAAAGCTGACAGCGATTTGTTGCCAGaagatggtgatgatgatgctggTGAATATGTGGAGCCCTACGATGAACTGTTAGTTCAATTCCTTGATGAAGCAAATCAAATTGCTGAAGCTAGATTAGCTGCTAGAAGACATGCGAGAGCAGAGGCTCGCGAAATACGAATGCGTGAATTGGAACGTCAGCAAAAGGAACAAGAATCTAATGCAGATCGTGTATTCGATATGCATACGACTTCACCTGGCATAACATCATTATCACATATGCGTCTAGGCTTAGGTAGTTCACCAGTTACTGGCCTTCTAAACTCCACACGAGGCAACTCTATGTCATCAAGACGTAGTAGTGAAGATTCGCTAGAAGAGGAAGGTCGCAGCTTAAGAGATATCCGTCATGAGTTAAAGGATGTGGAAGATCGGTTTCGTAAGGCTATGATAGCAAATGCCCAGTTGGATAATGATCGTGCCTCACAAACGTATCAAATACAGTTGCTTAAAGACAAACTGGAAGATATGGAAGAATCATATGCACAGCTGCAACGCGAATGTAAAGAAAAGACACGCGATTGTAATGCATTAAAGCGTTCGTTAGATAAGTTAAGTGAAGAGTTAAAACTGGTACAGGGTCAGCTCGATGAGCGTGACACACTGATAACAGAACAGGGTCTAGTTATTGTGGCAattgaaaatgaggatggcACTGATGCCAAACGTGCTCTAGTCAGTGTTGAAAATGCACAACTATTGGGTTCGGTACAAGGATCATTAGATGTTCGACTTAAGAAATTTAgcgaagaaaaacaacaattacaaagTGAAGTGCAACATTTGCAGGAACAATTAGAAACATATAAAAGTCAGGGTAAAGGTCGTGGCAAAAATAGTTCTTCAAATGGCCCTGTAGGttcagatgatgatgattatgaagCTCAAAgAGAAGCCAATAAAATCATTTcggattataaatataaattacaaaaagctGAACAGGAAATCGCTAGTCTACAGTCGAGTTTAGCCCGTTCCGAAACGCAAGTTATACGCTATAAAAGCACAGCAGAAGCAGCCGAAAAAGCCGAAGCAGAgcttaaaattgaaagaagGAAACTGCAAAGAGAGAATCGCGAAGCAATGGAAAAACTCGAAGAGTTAGAAACATCAAATAATCATCTGCTAAAACGTTTGGATAAATTAAAGAATGCGAAAAGTGCTTTGCTTAAAGATCTCTGA
Protein Sequence: MSVEQKLTDKNVVTTTTTTNNTTSSSNSNSNSKTSNNKKNNHNSAKKIIKKALKTSKSKKTNKTANANVNNNSNSGSSNNNIDTSNKTAKSNNNNKSKNTNIEVDCGGISSNNKNNSSIEVPNDEIIEELFDFSDSDLKELDASNEENIKGNNSNDVISDISGEPGELIEVVEMQKNFINDNKNNKEQQQQEQQQVLAISNESTDNIDKQTEEKENNVEEENEIKTKTSTTNALAESTNTLNLVSNGGNETLNENNKDPVQQTAEEKKSPQENDAKQQTINVLNTHCSVEANDKILASPSSSPTLPDIKSMQTKNVSSGPEFISVNKESSHTAITTDKNKADSDLLPEDGDDDAGEYVEPYDELLVQFLDEANQIAEARLAARRHARAEAREIRMRELERQQKEQESNADRVFDMHTTSPGITSLSHMRLGLGSSPVTGLLNSTRGNSMSSRRSSEDSLEEEGRSLRDIRHELKDVEDRFRKAMIANAQLDNDRASQTYQIQLLKDKLEDMEESYAQLQRECKEKTRDCNALKRSLDKLSEELKLVQGQLDERDTLITEQGLVIVAIENEDGTDAKRALVSVENAQLLGSVQGSLDVRLKKFSEEKQQLQSEVQHLQEQLETYKSQGKGRGKNSSSNGPVGSDDDDYEAQREANKIISDYKYKLQKAEQEIASLQSSLARSETQVIRYKSTAEAAEKAEAELKIERRKLQRENREAMEKLEELETSNNHLLKRLDKLKNAKSALLKDL

Similar Transcription Factors

Sequence clustering based on sequence similarity using MMseqs2

100% Identity: iTF_01315498;
90% Identity: iTF_01315498;
80% Identity: -