Sper006025.2
Basic Information
- Insect
- Sarcophaga peregrina
- Gene Symbol
- lrrfip2_1
- Assembly
- GCA_014635995.1
- Location
- CM025790.1:8622382-8636408[+]
Transcription Factor Domain
- TF Family
- LRRFIP
- Domain
- LRRFIP domain
- PFAM
- PF09738
- TF Group
- Unclassified Structure
- Description
- LRRFIP1 is a transcriptional repressor which preferentially binds to the GC-rich consensus sequence (5'- AGCCCCCGGCG-3') and may regulate expression of TNF, EGFR and PDGFA [1]. LRRFIP2 may function as activator of the canonical Wnt signalling pathway, in association with DVL3, upstream of CTNNB1/beta-catenin [2].
- Hmmscan Out
-
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc 1 3 0.37 5.2e+03 -3.0 5.2 24 168 117 158 72 210 0.55 2 3 3.5e-117 5e-113 378.0 26.7 1 299 298 594 298 595 0.93 3 3 0.13 1.8e+03 -1.5 3.7 220 245 623 648 598 669 0.47
Sequence Information
- Coding Sequence
- ATGGATACATCTAGTGCCGTCGGACGGCGAAGAGTTAATTCCCGTGTCAATGCCGAAGATCAAGCTTTGGATCAAATCGCTAAAGAGagtaAAAATACTAATACTGAAGTCGACTGTGGCGGCAAtagtagcaataacaacaacagcaagagtAATGTTGAAGTGCCTAACGATGAAATCATCGAGGAGTTGTTCGATTTTAGTGATTCCGATTTAAAAGAACTCGATGCAactaatgaagaaaatattaaagacaACAATAGCAACGATTTCAGTGGAGAACCTGGTGAACAGATAGAGGTGgtggaaatgcaaaaaaatgttattaatgataataacaacaacaaagagcaacagcaacaagaacaacaacaggtGTTAGATATATTATCTAATGAATCAACTGATAACattgataaacaaataaacggcaaagaaaaagttaacgaagaagaaaacgaaattaaaacaaagactTCCACAGCTAATGCGTTAGTAGAGTCACCTACTACGTTAAAGTTAATAAGCGACAGCGGAAATGAAACCCAACAGCAGacagcagaagaaaaaaaatccccaaAAGAAACAATTGACGTGTTAAACACCCATTGTTCTGTTGAAGCCGACGATAAAACATTACCATTGCCATCTTCATCACCAGCTCAGCCAGACATAAAGTCTAAGCAAACAATAAATGAGTCTTCTGGTCCAGAGTTCGTTAGCGTTAATAAAGAAAGTAATCATACGGCCACCACAACTGATAAAAATAACGCTGACAGCAGCGATTTAATGCCAGAAGATGGTTATGgcgatgctgatgatgatgctggTGAATATGTGGAACCCTACGATGAACTGTTAGTTCAATTCCTTGatgaagcaaataaaattGCTGAAGCTAGATTAGCTGCTAGAAGGCATGCGAGAGCAGAGGCTCGCGAAATACGAATGCGTGAATTGGAACGTCAGCAAAAGGAACAAGAATCCAATGCAGATCGTGTATTCGATATGCATACGAGTTCACCTGGCATAACATCATTATCCCATATGCGACTAGGCTTAGGTAGTTCACCAGTTACTGGCCTTTTAAACTCCACCCGAGGCAATTCTATGTCATCAAGACGTAGTAGTGAAGATTCGCTAGAAGAGGAAGGTCGCAGCTTAAGAGATATCCGTCATGAGTTAAAggaTGTGGAAGATCGGTTTCGTAAGGCTATGATAGCAAATGCCCAGTTGGATAATGATCGTGCCTCACAAACGTATCAAATACAGTTGCTTAAAGACAAACTGGAAGATATGGAAGAATCATATGCACAGCTGCAACGCGAATGTAAAGAAAAGACACGCGATTGTAATGCATTAAAACGTTCATTAGATAAGTTAAGTGAAGAGTTAAAACTGGTACAGGGTCAGCTCGATGAGCGTGACACACTGATAACAGATCAGGGTCTAGTTATTGTGGCAATTGAAAATGAGGATGGCACTGATGCCAAACGTGCTCTAGTCAGTGTTGAAAATGCACAACTATTGGGTTCGGTACAAGGATCATTAGaTGTTCGACTTAAGAAATTTAgcgaagaaaaacaacaattacaaaatgaAGTGCAACATTTGCAGGAACAATTAGAAACATATAAAAGTCAGGGTAAAGGTCGTGGCAAAAATAGTTCTTCAAATGGTCCTCTAGGCtcagatgatgatgattatgaagCTCAAAGAGAagccaataaaataatttcggattataaatataaattacaaaaagctGAACAAGAAATCGCTAGTCTACAGTCGAGTTTAGCCCGTTCCGAAACACAAGTTATACGCTATAAAAGCACAGCAGAAGCAGCCGAAAAAGCCGAAGCTGAGCTTAAAATTGAAAGAAGGAAACTGCAAAGAGAGAATCGCGAAGCAATGGAAAAACTCGAAGAGTTAGAAACATCAAATAATCATCTGTTAAAACGTTTGGACAAATTAAAGAATGCCAAAAGTGCTTTGCTTAAAGATCTCTGA
- Protein Sequence
- MDTSSAVGRRRVNSRVNAEDQALDQIAKESKNTNTEVDCGGNSSNNNNSKSNVEVPNDEIIEELFDFSDSDLKELDATNEENIKDNNSNDFSGEPGEQIEVVEMQKNVINDNNNNKEQQQQEQQQVLDILSNESTDNIDKQINGKEKVNEEENEIKTKTSTANALVESPTTLKLISDSGNETQQQTAEEKKSPKETIDVLNTHCSVEADDKTLPLPSSSPAQPDIKSKQTINESSGPEFVSVNKESNHTATTTDKNNADSSDLMPEDGYGDADDDAGEYVEPYDELLVQFLDEANKIAEARLAARRHARAEAREIRMRELERQQKEQESNADRVFDMHTSSPGITSLSHMRLGLGSSPVTGLLNSTRGNSMSSRRSSEDSLEEEGRSLRDIRHELKDVEDRFRKAMIANAQLDNDRASQTYQIQLLKDKLEDMEESYAQLQRECKEKTRDCNALKRSLDKLSEELKLVQGQLDERDTLITDQGLVIVAIENEDGTDAKRALVSVENAQLLGSVQGSLDVRLKKFSEEKQQLQNEVQHLQEQLETYKSQGKGRGKNSSSNGPLGSDDDDYEAQREANKIISDYKYKLQKAEQEIASLQSSLARSETQVIRYKSTAEAAEKAEAELKIERRKLQRENREAMEKLEELETSNNHLLKRLDKLKNAKSALLKDL*
Similar Transcription Factors
Sequence clustering based on sequence similarity using MMseqs2
- 100% Identity
- iTF_01315498;
- 90% Identity
- -
- 80% Identity
- -